Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 117793 | 0.68 | 0.319988 |
Target: 5'- gGGCGCCaCgCCCGGCGgGGCGGggCc-- -3' miRNA: 3'- gCCGCGG-G-GGGCCGC-CUGCCgaGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 59141 | 0.68 | 0.28732 |
Target: 5'- uGGCGCCCgCgGGCGGGuccaGGC-CGGc -3' miRNA: 3'- gCCGCGGGgGgCCGCCUg---CCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 78331 | 0.67 | 0.348072 |
Target: 5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3' miRNA: 3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 5392 | 0.67 | 0.354629 |
Target: 5'- gGGCGCCCcgccgucCCCGGCGa--GGC-CGAGu -3' miRNA: 3'- gCCGCGGG-------GGGCCGCcugCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 81418 | 0.67 | 0.355362 |
Target: 5'- uGGCGUCCCCgccgaggucgCGGCGcagcgaGACGGCgcacggCGAGa -3' miRNA: 3'- gCCGCGGGGG----------GCCGC------CUGCCGa-----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 86806 | 0.67 | 0.355362 |
Target: 5'- gCGGgGCCuCCCCGGCGccCGGCccagugCGGc -3' miRNA: 3'- -GCCgCGG-GGGGCCGCcuGCCGa-----GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 107035 | 0.67 | 0.355362 |
Target: 5'- gCGGCGCggCCCCUGGCcGGCGaGC-CGGc -3' miRNA: 3'- -GCCGCG--GGGGGCCGcCUGC-CGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 127912 | 0.67 | 0.355362 |
Target: 5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3' miRNA: 3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 131506 | 0.67 | 0.355362 |
Target: 5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3' miRNA: 3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40086 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3' miRNA: 3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 9385 | 0.67 | 0.348072 |
Target: 5'- gGGgGCCCCCCGcGCGGGuCGGg----- -3' miRNA: 3'- gCCgCGGGGGGC-CGCCU-GCCgagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 20113 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCCCggcgacggggCUGGgGGGCgGGCgccgCGGGg -3' miRNA: 3'- gCCGCGGGG----------GGCCgCCUG-CCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 5349 | 0.67 | 0.340889 |
Target: 5'- gGGCGCCCUcuCCGGC--GCGGCgccggCGGGg -3' miRNA: 3'- gCCGCGGGG--GGCCGccUGCCGa----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 38402 | 0.67 | 0.340889 |
Target: 5'- gGGCGCCCCcuCCGGCcucccCGGCUcCGGg -3' miRNA: 3'- gCCGCGGGG--GGCCGccu--GCCGA-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 112083 | 0.67 | 0.340889 |
Target: 5'- uGGaGCUCCCCGGguCGGGCGGCg-GAc -3' miRNA: 3'- gCCgCGGGGGGCC--GCCUGCCGagCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 4996 | 0.67 | 0.340889 |
Target: 5'- gCGGCGCUUCCUGcGCGGG-GGC-CGGg -3' miRNA: 3'- -GCCGCGGGGGGC-CGCCUgCCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 134805 | 0.67 | 0.340889 |
Target: 5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3' miRNA: 3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 58079 | 0.67 | 0.340889 |
Target: 5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3' miRNA: 3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 66051 | 0.67 | 0.340889 |
Target: 5'- cCGGUGCCuguccaggaCCCC-GCGGACGGC-CGc- -3' miRNA: 3'- -GCCGCGG---------GGGGcCGCCUGCCGaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 55474 | 0.67 | 0.355362 |
Target: 5'- gGGCGCgCgCCCGGCgccgcGGACGGC-Ca-- -3' miRNA: 3'- gCCGCGgG-GGGCCG-----CCUGCCGaGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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