Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 117793 | 0.68 | 0.319988 |
Target: 5'- gGGCGCCaCgCCCGGCGgGGCGGggCc-- -3' miRNA: 3'- gCCGCGG-G-GGGCCGC-CUGCCgaGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 97171 | 0.68 | 0.319988 |
Target: 5'- -aGCGCUCggCCCGGCGcacGACGcGCUCGAc -3' miRNA: 3'- gcCGCGGG--GGGCCGC---CUGC-CGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 51577 | 0.67 | 0.326847 |
Target: 5'- uCGGC-CCCCCUcgggcgGGUGGACGGCg---- -3' miRNA: 3'- -GCCGcGGGGGG------CCGCCUGCCGagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 122453 | 0.67 | 0.326847 |
Target: 5'- gCGGCGUCCa-CGGCGG-CGGCgggcgcCGAGg -3' miRNA: 3'- -GCCGCGGGggGCCGCCuGCCGa-----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 115553 | 0.67 | 0.331712 |
Target: 5'- aCGGCguacucGCCCgCgGGCGGGCGcgcgggcaggucgcGCUCGAGc -3' miRNA: 3'- -GCCG------CGGGgGgCCGCCUGC--------------CGAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 118226 | 0.67 | 0.333814 |
Target: 5'- gGGCGCCCggaccaccgggCUCGGCGG-CgGGCUCa-- -3' miRNA: 3'- gCCGCGGG-----------GGGCCGCCuG-CCGAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 101543 | 0.67 | 0.333814 |
Target: 5'- uGGCGCgCCugcgCCCGGCGGACGuGUaCGc- -3' miRNA: 3'- gCCGCG-GG----GGGCCGCCUGC-CGaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 82674 | 0.67 | 0.333814 |
Target: 5'- gCGGCGCgCCgCGGgcgaGGGCGGCggcccccgCGAGg -3' miRNA: 3'- -GCCGCGgGGgGCCg---CCUGCCGa-------GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 10517 | 0.67 | 0.333814 |
Target: 5'- aGGCGCgUCCCCGGCgcGGGCGcCUCu-- -3' miRNA: 3'- gCCGCG-GGGGGCCG--CCUGCcGAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 66051 | 0.67 | 0.340889 |
Target: 5'- cCGGUGCCuguccaggaCCCC-GCGGACGGC-CGc- -3' miRNA: 3'- -GCCGCGG---------GGGGcCGCCUGCCGaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 58079 | 0.67 | 0.340889 |
Target: 5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3' miRNA: 3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 134805 | 0.67 | 0.340889 |
Target: 5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3' miRNA: 3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 4996 | 0.67 | 0.340889 |
Target: 5'- gCGGCGCUUCCUGcGCGGG-GGC-CGGg -3' miRNA: 3'- -GCCGCGGGGGGC-CGCCUgCCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 112083 | 0.67 | 0.340889 |
Target: 5'- uGGaGCUCCCCGGguCGGGCGGCg-GAc -3' miRNA: 3'- gCCgCGGGGGGCC--GCCUGCCGagCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 38402 | 0.67 | 0.340889 |
Target: 5'- gGGCGCCCCcuCCGGCcucccCGGCUcCGGg -3' miRNA: 3'- gCCGCGGGG--GGCCGccu--GCCGA-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 5349 | 0.67 | 0.340889 |
Target: 5'- gGGCGCCCUcuCCGGC--GCGGCgccggCGGGg -3' miRNA: 3'- gCCGCGGGG--GGCCGccUGCCGa----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 20113 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCCCggcgacggggCUGGgGGGCgGGCgccgCGGGg -3' miRNA: 3'- gCCGCGGGG----------GGCCgCCUG-CCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 9385 | 0.67 | 0.348072 |
Target: 5'- gGGgGCCCCCCGcGCGGGuCGGg----- -3' miRNA: 3'- gCCgCGGGGGGC-CGCCU-GCCgagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40086 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3' miRNA: 3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 78331 | 0.67 | 0.348072 |
Target: 5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3' miRNA: 3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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