Results 121 - 140 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 14253 | 0.67 | 0.370263 |
Target: 5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3' miRNA: 3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 20466 | 0.67 | 0.372535 |
Target: 5'- uGGCGCcgguCCCCCGggggggcGCGGGggucgucggcggcucUGGCUCGAu -3' miRNA: 3'- gCCGCG----GGGGGC-------CGCCU---------------GCCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 141756 | 0.66 | 0.377873 |
Target: 5'- gGGCGCgCgCCCCGGUGGcgucgcCGGUUCu-- -3' miRNA: 3'- gCCGCG-G-GGGGCCGCCu-----GCCGAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 100430 | 0.66 | 0.377873 |
Target: 5'- gGGCGCUgCgCGGCGuGAUGGCgcagaCGAc -3' miRNA: 3'- gCCGCGGgGgGCCGC-CUGCCGa----GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 137042 | 0.66 | 0.377873 |
Target: 5'- aCGcGUGCCCCCCGGCGc-CGGUguaccgcgUGGAg -3' miRNA: 3'- -GC-CGCGGGGGGCCGCcuGCCGa-------GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 28871 | 0.66 | 0.38481 |
Target: 5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3' miRNA: 3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 28590 | 0.66 | 0.38481 |
Target: 5'- cCGGCGCgUCCCCggaGGCGGgugccgcGgGGUUCGAu -3' miRNA: 3'- -GCCGCG-GGGGG---CCGCC-------UgCCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 123764 | 0.66 | 0.385586 |
Target: 5'- uGGCGCgggCCCCGGgGGcauCGGCcCGGg -3' miRNA: 3'- gCCGCGg--GGGGCCgCCu--GCCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 136420 | 0.66 | 0.385586 |
Target: 5'- gCGGgGCCCCgCGGCGGcgcacgccGCGcGCuacgUCGAc -3' miRNA: 3'- -GCCgCGGGGgGCCGCC--------UGC-CG----AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 59929 | 0.66 | 0.385586 |
Target: 5'- aGGCGCgCgCCGucaGCGG-CGGCUCGc- -3' miRNA: 3'- gCCGCGgGgGGC---CGCCuGCCGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 97500 | 0.66 | 0.385586 |
Target: 5'- -aGCGCCUCgCGGCGGugGcGCUgCGu- -3' miRNA: 3'- gcCGCGGGGgGCCGCCugC-CGA-GCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 9046 | 0.66 | 0.392616 |
Target: 5'- gGGCGCCCCgcgugcuCCGGgGGcgcCGGC-CGGc -3' miRNA: 3'- gCCGCGGGG-------GGCCgCCu--GCCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 86567 | 0.66 | 0.393403 |
Target: 5'- cCGGCaGCUCUCgGcGCGGGCGcGCUcCGAGc -3' miRNA: 3'- -GCCG-CGGGGGgC-CGCCUGC-CGA-GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 107344 | 0.66 | 0.393403 |
Target: 5'- uCGGCgacGCCCaCCCGGCccGCGGCccCGAu -3' miRNA: 3'- -GCCG---CGGG-GGGCCGccUGCCGa-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 107436 | 0.66 | 0.393403 |
Target: 5'- uGGCGCCaaCCCgUGGCuGGACcuGCUCGGc -3' miRNA: 3'- gCCGCGG--GGG-GCCG-CCUGc-CGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 39984 | 0.66 | 0.393403 |
Target: 5'- gGGCGCCCCgCCGGCcgugcucugGGACuuuGCccccuUCGAGa -3' miRNA: 3'- gCCGCGGGG-GGCCG---------CCUGc--CG-----AGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 49215 | 0.66 | 0.396558 |
Target: 5'- gCGGCGCggggUCCCCGGCucccacgccccgcucGGcugggcGCGGCUCGu- -3' miRNA: 3'- -GCCGCG----GGGGGCCG---------------CC------UGCCGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 39688 | 0.66 | 0.401322 |
Target: 5'- gCGcGUGCUCCCCaccGUGGACGGCUg--- -3' miRNA: 3'- -GC-CGCGGGGGGc--CGCCUGCCGAgcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 19283 | 0.66 | 0.401322 |
Target: 5'- gCGGgGCCCaCCGgggccagcggcGCGGGCGGC-CGGu -3' miRNA: 3'- -GCCgCGGGgGGC-----------CGCCUGCCGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36387 | 0.66 | 0.401322 |
Target: 5'- cCGGgGCCCCCggCGGCcccGGGC-GCUCGu- -3' miRNA: 3'- -GCCgCGGGGG--GCCG---CCUGcCGAGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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