miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 90672 0.68 0.300063
Target:  5'- gCGGCGggccgcuuguCCCCCgCGGCGGG-GGCggCGGAc -3'
miRNA:   3'- -GCCGC----------GGGGG-GCCGCCUgCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 2286 0.68 0.293637
Target:  5'- gCGGgGCgCCCgCGGCGGcgACGGCgccCGGGg -3'
miRNA:   3'- -GCCgCGgGGG-GCCGCC--UGCCGa--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 36632 0.68 0.293637
Target:  5'- uCGGCGCCCggCGGCGG-CGGCg---- -3'
miRNA:   3'- -GCCGCGGGggGCCGCCuGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 43689 0.68 0.293637
Target:  5'- aGGgGCCCgCCGGCGcGACGGggaGAGg -3'
miRNA:   3'- gCCgCGGGgGGCCGC-CUGCCgagCUU- -5'
29641 5' -67.3 NC_006151.1 + 64869 0.68 0.293637
Target:  5'- gGGcCGCUgCCCGGCGGGagcagGGCcgCGAAg -3'
miRNA:   3'- gCC-GCGGgGGGCCGCCUg----CCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 104803 0.68 0.293637
Target:  5'- uCGuGCGCCgcgaCCUGGCGG-CGGCgcgCGAc -3'
miRNA:   3'- -GC-CGCGGg---GGGCCGCCuGCCGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 109303 0.68 0.293637
Target:  5'- gCGGCccGCCgCCUCGGCGGcagcaGCGGCggCGGc -3'
miRNA:   3'- -GCCG--CGG-GGGGCCGCC-----UGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 133302 0.68 0.28732
Target:  5'- aGGUuCUCCCCGG-GGGCGGCccgugUCGAGg -3'
miRNA:   3'- gCCGcGGGGGGCCgCCUGCCG-----AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 59141 0.68 0.28732
Target:  5'- uGGCGCCCgCgGGCGGGuccaGGC-CGGc -3'
miRNA:   3'- gCCGCGGGgGgCCGCCUg---CCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 106183 0.68 0.28732
Target:  5'- -cGCGCaCCCgccgcuggagCCGGCGGuGCGGCUCGc- -3'
miRNA:   3'- gcCGCG-GGG----------GGCCGCC-UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 81356 0.68 0.28111
Target:  5'- -cGCGCCcggggCCCCGGCGGGCGccaGCgCGAGc -3'
miRNA:   3'- gcCGCGG-----GGGGCCGCCUGC---CGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 37174 0.68 0.28111
Target:  5'- cCGGCGCCCgCC-GCGGccccGCGGCccUCGGc -3'
miRNA:   3'- -GCCGCGGGgGGcCGCC----UGCCG--AGCUu -5'
29641 5' -67.3 NC_006151.1 + 140447 0.68 0.28111
Target:  5'- cCGGCGCCugCCUCGGCGGgaucauggACGcGCUgGAc -3'
miRNA:   3'- -GCCGCGG--GGGGCCGCC--------UGC-CGAgCUu -5'
29641 5' -67.3 NC_006151.1 + 109539 0.68 0.28111
Target:  5'- -aGCGCCCCCCGGaggcgccgUGGACguGGCcCGAGc -3'
miRNA:   3'- gcCGCGGGGGGCC--------GCCUG--CCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 20633 0.68 0.28111
Target:  5'- gGGCGCCCCCUgGGCGGcACcagGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGG-CCGCC-UG---CCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 38629 0.69 0.275007
Target:  5'- cCGGCgcgGCCCUCCGcGgGGACGGCcaCGGc -3'
miRNA:   3'- -GCCG---CGGGGGGC-CgCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 137650 0.69 0.275007
Target:  5'- -cGCGCCCccguCCCGGCGGACGaGCg---- -3'
miRNA:   3'- gcCGCGGG----GGGCCGCCUGC-CGagcuu -5'
29641 5' -67.3 NC_006151.1 + 4380 0.69 0.274402
Target:  5'- aCGGuCGCCuCCCCGGCGcGgggguccGCGGCgCGGc -3'
miRNA:   3'- -GCC-GCGG-GGGGCCGC-C-------UGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 66772 0.69 0.26901
Target:  5'- aCGGcCGCCCUCgggaCGGCGGcgGCGGCggCGGGg -3'
miRNA:   3'- -GCC-GCGGGGG----GCCGCC--UGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 67565 0.69 0.26901
Target:  5'- uGGCGCCCgCgGGCGuccagcccgccGAUGaGCUCGGAg -3'
miRNA:   3'- gCCGCGGGgGgCCGC-----------CUGC-CGAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.