Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 67986 | 0.69 | 0.251653 |
Target: 5'- gCGGCGgCCCgCCGGCGccgcGGCcacgGGCUCGGc -3' miRNA: 3'- -GCCGCgGGG-GGCCGC----CUG----CCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 68035 | 0.71 | 0.182143 |
Target: 5'- aGGCGgCCCgCCGGCGcGGCgggcacgGGCUCGGc -3' miRNA: 3'- gCCGCgGGG-GGCCGC-CUG-------CCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 69066 | 0.67 | 0.355362 |
Target: 5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3' miRNA: 3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 69220 | 0.68 | 0.306596 |
Target: 5'- cCGGcCGCCCCa-GGCGGugGaguGCUCGu- -3' miRNA: 3'- -GCC-GCGGGGggCCGCCugC---CGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 70943 | 0.7 | 0.229958 |
Target: 5'- aCGGCGCCUUCuCGGCGGugcgcgUGGCcgUCGAGg -3' miRNA: 3'- -GCCGCGGGGG-GCCGCCu-----GCCG--AGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 72919 | 0.68 | 0.300063 |
Target: 5'- uGGCGaCCgCCUCGGCGGGCGugaagaaCUUGAAg -3' miRNA: 3'- gCCGC-GG-GGGGCCGCCUGCc------GAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 75454 | 0.67 | 0.370263 |
Target: 5'- uGGCGCgCguagcggUCGGCGGcCGGCUUGAAg -3' miRNA: 3'- gCCGCGgGg------GGCCGCCuGCCGAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 76793 | 0.67 | 0.370263 |
Target: 5'- uCGGCGCCguacagcgCCCCGGCgaGGGCGGgCgCGu- -3' miRNA: 3'- -GCCGCGG--------GGGGCCG--CCUGCC-GaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 77242 | 0.75 | 0.095207 |
Target: 5'- aGGCGCCCCCCGGCGGGuuuaaaggagUGGUcgCGc- -3' miRNA: 3'- gCCGCGGGGGGCCGCCU----------GCCGa-GCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 77887 | 0.67 | 0.36276 |
Target: 5'- gCGuGCGCCCCCCGcucaGCGGcgagacGCGGCccaCGGc -3' miRNA: 3'- -GC-CGCGGGGGGC----CGCC------UGCCGa--GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 78331 | 0.67 | 0.348072 |
Target: 5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3' miRNA: 3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 79317 | 0.75 | 0.095207 |
Target: 5'- aCGG-GCCuCCCCGGCgGGACGGC-CGGGu -3' miRNA: 3'- -GCCgCGG-GGGGCCG-CCUGCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 81356 | 0.68 | 0.28111 |
Target: 5'- -cGCGCCcggggCCCCGGCGGGCGccaGCgCGAGc -3' miRNA: 3'- gcCGCGG-----GGGGCCGCCUGC---CGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 81418 | 0.67 | 0.355362 |
Target: 5'- uGGCGUCCCCgccgaggucgCGGCGcagcgaGACGGCgcacggCGAGa -3' miRNA: 3'- gCCGCGGGGG----------GCCGC------CUGCCGa-----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 82674 | 0.67 | 0.333814 |
Target: 5'- gCGGCGCgCCgCGGgcgaGGGCGGCggcccccgCGAGg -3' miRNA: 3'- -GCCGCGgGGgGCCg---CCUGCCGa-------GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 86567 | 0.66 | 0.393403 |
Target: 5'- cCGGCaGCUCUCgGcGCGGGCGcGCUcCGAGc -3' miRNA: 3'- -GCCG-CGGGGGgC-CGCCUGC-CGA-GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 86806 | 0.67 | 0.355362 |
Target: 5'- gCGGgGCCuCCCCGGCGccCGGCccagugCGGc -3' miRNA: 3'- -GCCgCGG-GGGGCCGCcuGCCGa-----GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 89720 | 0.7 | 0.235229 |
Target: 5'- gCGGCGCCggccgcggCCgCGGUGGugGGCgagaCGAGc -3' miRNA: 3'- -GCCGCGG--------GGgGCCGCCugCCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 90672 | 0.68 | 0.300063 |
Target: 5'- gCGGCGggccgcuuguCCCCCgCGGCGGG-GGCggCGGAc -3' miRNA: 3'- -GCCGC----------GGGGG-GCCGCCUgCCGa-GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 90710 | 0.66 | 0.41746 |
Target: 5'- -cGCGCCCgCCCcGCaGGCGGCggCGAc -3' miRNA: 3'- gcCGCGGG-GGGcCGcCUGCCGa-GCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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