miRNA display CGI


Results 101 - 120 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 90744 0.7 0.209863
Target:  5'- gCGGCGCCCUCgggggCGGCGGgcACGGUggCGGGg -3'
miRNA:   3'- -GCCGCGGGGG-----GCCGCC--UGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 91115 0.7 0.214741
Target:  5'- gCGGCGCCCuucgCCaCGGCGG-CGaGCUUGGc -3'
miRNA:   3'- -GCCGCGGG----GG-GCCGCCuGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 95334 0.68 0.313238
Target:  5'- aGGCGCCgCCCGccaggcacGCGGGCaGGUUCa-- -3'
miRNA:   3'- gCCGCGGgGGGC--------CGCCUG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 97171 0.68 0.319988
Target:  5'- -aGCGCUCggCCCGGCGcacGACGcGCUCGAc -3'
miRNA:   3'- gcCGCGGG--GGGCCGC---CUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 97500 0.66 0.385586
Target:  5'- -aGCGCCUCgCGGCGGugGcGCUgCGu- -3'
miRNA:   3'- gcCGCGGGGgGCCGCCugC-CGA-GCuu -5'
29641 5' -67.3 NC_006151.1 + 100102 0.66 0.401322
Target:  5'- cCGGCGCCgCCCUcGCuGGCGGCcagcgccuuccUCGGGg -3'
miRNA:   3'- -GCCGCGG-GGGGcCGcCUGCCG-----------AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 100430 0.66 0.377873
Target:  5'- gGGCGCUgCgCGGCGuGAUGGCgcagaCGAc -3'
miRNA:   3'- gCCGCGGgGgGCCGC-CUGCCGa----GCUu -5'
29641 5' -67.3 NC_006151.1 + 101543 0.67 0.333814
Target:  5'- uGGCGCgCCugcgCCCGGCGGACGuGUaCGc- -3'
miRNA:   3'- gCCGCG-GG----GGGCCGCCUGC-CGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 102510 0.68 0.313238
Target:  5'- gCGGCGCgggaCCCCGGCGG-CGuCUaCGAc -3'
miRNA:   3'- -GCCGCGg---GGGGCCGCCuGCcGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 102694 0.69 0.251653
Target:  5'- gGGCGCCCggcgCgGGCGGcGCGGC-CGAGc -3'
miRNA:   3'- gCCGCGGGg---GgCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 104803 0.68 0.293637
Target:  5'- uCGuGCGCCgcgaCCUGGCGG-CGGCgcgCGAc -3'
miRNA:   3'- -GC-CGCGGg---GGGCCGCCuGCCGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 106183 0.68 0.28732
Target:  5'- -cGCGCaCCCgccgcuggagCCGGCGGuGCGGCUCGc- -3'
miRNA:   3'- gcCGCG-GGG----------GGCCGCC-UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 107035 0.67 0.355362
Target:  5'- gCGGCGCggCCCCUGGCcGGCGaGC-CGGc -3'
miRNA:   3'- -GCCGCG--GGGGGCCGcCUGC-CGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 107344 0.66 0.393403
Target:  5'- uCGGCgacGCCCaCCCGGCccGCGGCccCGAu -3'
miRNA:   3'- -GCCG---CGGG-GGGCCGccUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 107380 0.66 0.41746
Target:  5'- gGGCuGCCCCCCgaguuGGCGGGgGaGgaCGAc -3'
miRNA:   3'- gCCG-CGGGGGG-----CCGCCUgC-CgaGCUu -5'
29641 5' -67.3 NC_006151.1 + 107436 0.66 0.393403
Target:  5'- uGGCGCCaaCCCgUGGCuGGACcuGCUCGGc -3'
miRNA:   3'- gCCGCGG--GGG-GCCG-CCUGc-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 109303 0.68 0.293637
Target:  5'- gCGGCccGCCgCCUCGGCGGcagcaGCGGCggCGGc -3'
miRNA:   3'- -GCCG--CGG-GGGGCCGCC-----UGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 109539 0.68 0.28111
Target:  5'- -aGCGCCCCCCGGaggcgccgUGGACguGGCcCGAGc -3'
miRNA:   3'- gcCGCGGGGGGCC--------GCCUG--CCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 112042 0.66 0.41746
Target:  5'- uGGgGCCggCgGGCGGGCGGCggCGGu -3'
miRNA:   3'- gCCgCGGggGgCCGCCUGCCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 112083 0.67 0.340889
Target:  5'- uGGaGCUCCCCGGguCGGGCGGCg-GAc -3'
miRNA:   3'- gCCgCGGGGGGCC--GCCUGCCGagCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.