miRNA display CGI


Results 121 - 140 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 114701 0.71 0.178339
Target:  5'- gGGCGCgUCCCCGG-GGGCGGUUucCGGAa -3'
miRNA:   3'- gCCGCG-GGGGGCCgCCUGCCGA--GCUU- -5'
29641 5' -67.3 NC_006151.1 + 114914 0.7 0.235229
Target:  5'- gGGCGCacggCCCCGGCGu-CGcGCUCGGc -3'
miRNA:   3'- gCCGCGg---GGGGCCGCcuGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 115553 0.67 0.331712
Target:  5'- aCGGCguacucGCCCgCgGGCGGGCGcgcgggcaggucgcGCUCGAGc -3'
miRNA:   3'- -GCCG------CGGGgGgCCGCCUGC--------------CGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 117793 0.68 0.319988
Target:  5'- gGGCGCCaCgCCCGGCGgGGCGGggCc-- -3'
miRNA:   3'- gCCGCGG-G-GGGCCGC-CUGCCgaGcuu -5'
29641 5' -67.3 NC_006151.1 + 118226 0.67 0.333814
Target:  5'- gGGCGCCCggaccaccgggCUCGGCGG-CgGGCUCa-- -3'
miRNA:   3'- gCCGCGGG-----------GGGCCGCCuG-CCGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 120773 0.78 0.06079
Target:  5'- gCGGCGCCCgCUGGCGGacGCGGC-CGAc -3'
miRNA:   3'- -GCCGCGGGgGGCCGCC--UGCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 122453 0.67 0.326847
Target:  5'- gCGGCGUCCa-CGGCGG-CGGCgggcgcCGAGg -3'
miRNA:   3'- -GCCGCGGGggGCCGCCuGCCGa-----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 123008 0.72 0.15109
Target:  5'- cCGGCGCgCCCCCgccGGCGGACgccguGGCgugggCGGAc -3'
miRNA:   3'- -GCCGCG-GGGGG---CCGCCUG-----CCGa----GCUU- -5'
29641 5' -67.3 NC_006151.1 + 123764 0.66 0.385586
Target:  5'- uGGCGCgggCCCCGGgGGcauCGGCcCGGg -3'
miRNA:   3'- gCCGCGg--GGGGCCgCCu--GCCGaGCUu -5'
29641 5' -67.3 NC_006151.1 + 125241 0.71 0.204609
Target:  5'- cCGGCGCuCCCCCGGCccggcggGGAC-GCcCGAGc -3'
miRNA:   3'- -GCCGCG-GGGGGCCG-------CCUGcCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 127694 0.67 0.370263
Target:  5'- gCGGCGCUCUCCuGC-GACGaGCUCGu- -3'
miRNA:   3'- -GCCGCGGGGGGcCGcCUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 127727 0.66 0.41746
Target:  5'- cCGGCGUCCCCgucGCGGGCGGgaacCGGu -3'
miRNA:   3'- -GCCGCGGGGGgc-CGCCUGCCga--GCUu -5'
29641 5' -67.3 NC_006151.1 + 127912 0.67 0.355362
Target:  5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3'
miRNA:   3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5'
29641 5' -67.3 NC_006151.1 + 128210 0.69 0.240602
Target:  5'- uGGCGCCCCa-GGCGugcGACGaGCUCGu- -3'
miRNA:   3'- gCCGCGGGGggCCGC---CUGC-CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 129242 0.71 0.200395
Target:  5'- gGuGCGCCCCUCGGUGacGCGGCgCGAGg -3'
miRNA:   3'- gC-CGCGGGGGGCCGCc-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 130291 0.71 0.18689
Target:  5'- gGGCGCgCgCCGGCcGACGGCgCGGAg -3'
miRNA:   3'- gCCGCGgGgGGCCGcCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 131506 0.67 0.355362
Target:  5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3'
miRNA:   3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 133302 0.68 0.28732
Target:  5'- aGGUuCUCCCCGG-GGGCGGCccgugUCGAGg -3'
miRNA:   3'- gCCGcGGGGGGCCgCCUGCCG-----AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 133392 0.66 0.409341
Target:  5'- gCGGCGgCCggggCCGaGCGGGCGGuCUUGGc -3'
miRNA:   3'- -GCCGCgGGg---GGC-CGCCUGCC-GAGCUu -5'
29641 5' -67.3 NC_006151.1 + 133679 0.73 0.144029
Target:  5'- gCGGCGCgCCCCCgaGGCGGucucguCGGCggCGAc -3'
miRNA:   3'- -GCCGCG-GGGGG--CCGCCu-----GCCGa-GCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.