miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 79317 0.75 0.095207
Target:  5'- aCGG-GCCuCCCCGGCgGGACGGC-CGGGu -3'
miRNA:   3'- -GCCgCGG-GGGGCCG-CCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 78331 0.67 0.348072
Target:  5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3'
miRNA:   3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5'
29641 5' -67.3 NC_006151.1 + 77887 0.67 0.36276
Target:  5'- gCGuGCGCCCCCCGcucaGCGGcgagacGCGGCccaCGGc -3'
miRNA:   3'- -GC-CGCGGGGGGC----CGCC------UGCCGa--GCUu -5'
29641 5' -67.3 NC_006151.1 + 77242 0.75 0.095207
Target:  5'- aGGCGCCCCCCGGCGGGuuuaaaggagUGGUcgCGc- -3'
miRNA:   3'- gCCGCGGGGGGCCGCCU----------GCCGa-GCuu -5'
29641 5' -67.3 NC_006151.1 + 76793 0.67 0.370263
Target:  5'- uCGGCGCCguacagcgCCCCGGCgaGGGCGGgCgCGu- -3'
miRNA:   3'- -GCCGCGG--------GGGGCCG--CCUGCC-GaGCuu -5'
29641 5' -67.3 NC_006151.1 + 75454 0.67 0.370263
Target:  5'- uGGCGCgCguagcggUCGGCGGcCGGCUUGAAg -3'
miRNA:   3'- gCCGCGgGg------GGCCGCCuGCCGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 72919 0.68 0.300063
Target:  5'- uGGCGaCCgCCUCGGCGGGCGugaagaaCUUGAAg -3'
miRNA:   3'- gCCGC-GG-GGGGCCGCCUGCc------GAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 70943 0.7 0.229958
Target:  5'- aCGGCGCCUUCuCGGCGGugcgcgUGGCcgUCGAGg -3'
miRNA:   3'- -GCCGCGGGGG-GCCGCCu-----GCCG--AGCUU- -5'
29641 5' -67.3 NC_006151.1 + 69220 0.68 0.306596
Target:  5'- cCGGcCGCCCCa-GGCGGugGaguGCUCGu- -3'
miRNA:   3'- -GCC-GCGGGGggCCGCCugC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 69066 0.67 0.355362
Target:  5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3'
miRNA:   3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5'
29641 5' -67.3 NC_006151.1 + 68035 0.71 0.182143
Target:  5'- aGGCGgCCCgCCGGCGcGGCgggcacgGGCUCGGc -3'
miRNA:   3'- gCCGCgGGG-GGCCGC-CUG-------CCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 67986 0.69 0.251653
Target:  5'- gCGGCGgCCCgCCGGCGccgcGGCcacgGGCUCGGc -3'
miRNA:   3'- -GCCGCgGGG-GGCCGC----CUG----CCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 67565 0.69 0.26901
Target:  5'- uGGCGCCCgCgGGCGuccagcccgccGAUGaGCUCGGAg -3'
miRNA:   3'- gCCGCGGGgGgCCGC-----------CUGC-CGAGCUU- -5'
29641 5' -67.3 NC_006151.1 + 66772 0.69 0.26901
Target:  5'- aCGGcCGCCCUCgggaCGGCGGcgGCGGCggCGGGg -3'
miRNA:   3'- -GCC-GCGGGGG----GCCGCC--UGCCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 66051 0.67 0.340889
Target:  5'- cCGGUGCCuguccaggaCCCC-GCGGACGGC-CGc- -3'
miRNA:   3'- -GCCGCGG---------GGGGcCGCCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 65794 0.72 0.15109
Target:  5'- uGGCGCCgCCCGGCgcGGACGuGCcgCGGu -3'
miRNA:   3'- gCCGCGGgGGGCCG--CCUGC-CGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 64869 0.68 0.293637
Target:  5'- gGGcCGCUgCCCGGCGGGagcagGGCcgCGAAg -3'
miRNA:   3'- gCC-GCGGgGGGCCGCCUg----CCGa-GCUU- -5'
29641 5' -67.3 NC_006151.1 + 63769 0.7 0.235229
Target:  5'- uCGGCGCCCCCgcgucgccaGGCGGGguCGGC-CGu- -3'
miRNA:   3'- -GCCGCGGGGGg--------CCGCCU--GCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 59929 0.66 0.385586
Target:  5'- aGGCGCgCgCCGucaGCGG-CGGCUCGc- -3'
miRNA:   3'- gCCGCGgGgGGC---CGCCuGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 59141 0.68 0.28732
Target:  5'- uGGCGCCCgCgGGCGGGuccaGGC-CGGc -3'
miRNA:   3'- gCCGCGGGgGgCCGCCUg---CCGaGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.