miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29641 5' -67.3 NC_006151.1 + 58079 0.67 0.340889
Target:  5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3'
miRNA:   3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 57290 0.67 0.36276
Target:  5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3'
miRNA:   3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 57164 0.72 0.154738
Target:  5'- gGGCGUCCCCCGGC--GCGGCccaGAAg -3'
miRNA:   3'- gCCGCGGGGGGCCGccUGCCGag-CUU- -5'
29641 5' -67.3 NC_006151.1 + 56598 0.72 0.162272
Target:  5'- gCGGaCGCgCCCCGGCGG-CGcGCUCa-- -3'
miRNA:   3'- -GCC-GCGgGGGGCCGCCuGC-CGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 56350 0.67 0.36276
Target:  5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3'
miRNA:   3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5'
29641 5' -67.3 NC_006151.1 + 55879 0.7 0.229958
Target:  5'- gCGGCGCUgUCgCGGCGGACGuGCgccgggCGAc -3'
miRNA:   3'- -GCCGCGGgGG-GCCGCCUGC-CGa-----GCUu -5'
29641 5' -67.3 NC_006151.1 + 55474 0.67 0.355362
Target:  5'- gGGCGCgCgCCCGGCgccgcGGACGGC-Ca-- -3'
miRNA:   3'- gCCGCGgG-GGGCCG-----CCUGCCGaGcuu -5'
29641 5' -67.3 NC_006151.1 + 55061 0.66 0.409341
Target:  5'- uCGGCGaggaCCCGGCGGGCucGGCcgCGGc -3'
miRNA:   3'- -GCCGCggg-GGGCCGCCUG--CCGa-GCUu -5'
29641 5' -67.3 NC_006151.1 + 54624 0.74 0.110329
Target:  5'- gGGCGCgCCCCGGgGGgaaGCGGCggcgCGAGc -3'
miRNA:   3'- gCCGCGgGGGGCCgCC---UGCCGa---GCUU- -5'
29641 5' -67.3 NC_006151.1 + 54181 0.66 0.41746
Target:  5'- gGGCGCCCCCUcGCGGAUc-CUCa-- -3'
miRNA:   3'- gCCGCGGGGGGcCGCCUGccGAGcuu -5'
29641 5' -67.3 NC_006151.1 + 52370 0.71 0.200395
Target:  5'- cCGGCGCgCCCCCGGggcccgcggGGGCGGCgggCGc- -3'
miRNA:   3'- -GCCGCG-GGGGGCCg--------CCUGCCGa--GCuu -5'
29641 5' -67.3 NC_006151.1 + 51577 0.67 0.326847
Target:  5'- uCGGC-CCCCCUcgggcgGGUGGACGGCg---- -3'
miRNA:   3'- -GCCGcGGGGGG------CCGCCUGCCGagcuu -5'
29641 5' -67.3 NC_006151.1 + 50428 0.67 0.360529
Target:  5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3'
miRNA:   3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 50030 0.69 0.246076
Target:  5'- gCGGCGCCCCCgGGC--GCGGC-Ca-- -3'
miRNA:   3'- -GCCGCGGGGGgCCGccUGCCGaGcuu -5'
29641 5' -67.3 NC_006151.1 + 49215 0.66 0.396558
Target:  5'- gCGGCGCggggUCCCCGGCucccacgccccgcucGGcugggcGCGGCUCGu- -3'
miRNA:   3'- -GCCGCG----GGGGGCCG---------------CC------UGCCGAGCuu -5'
29641 5' -67.3 NC_006151.1 + 48229 0.71 0.191301
Target:  5'- -cGCGCUCCCCGGCGcGAgGaGCUgGAAu -3'
miRNA:   3'- gcCGCGGGGGGCCGC-CUgC-CGAgCUU- -5'
29641 5' -67.3 NC_006151.1 + 47214 0.71 0.191301
Target:  5'- uCGGgGCUCUcgggUCGGCuGGGCGGCUCGGc -3'
miRNA:   3'- -GCCgCGGGG----GGCCG-CCUGCCGAGCUu -5'
29641 5' -67.3 NC_006151.1 + 46567 0.7 0.229958
Target:  5'- aGGCGCUCCCCGcGCagggcccgacGGGCGGC-CGu- -3'
miRNA:   3'- gCCGCGGGGGGC-CG----------CCUGCCGaGCuu -5'
29641 5' -67.3 NC_006151.1 + 45560 0.73 0.130804
Target:  5'- aCGGCGCgCCCgGGCcaucgucccgGGACGGCcCGAGg -3'
miRNA:   3'- -GCCGCGgGGGgCCG----------CCUGCCGaGCUU- -5'
29641 5' -67.3 NC_006151.1 + 44102 0.69 0.244423
Target:  5'- cCGaGCGCCCauccccaucaacccCCCGG-GGGCGGCcaUCGAAa -3'
miRNA:   3'- -GC-CGCGGG--------------GGGCCgCCUGCCG--AGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.