Results 101 - 120 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 43689 | 0.68 | 0.293637 |
Target: 5'- aGGgGCCCgCCGGCGcGACGGggaGAGg -3' miRNA: 3'- gCCgCGGGgGGCCGC-CUGCCgagCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40569 | 0.73 | 0.144029 |
Target: 5'- gCGGCGgCggCCgCGGCGGAgGGCUCGGc -3' miRNA: 3'- -GCCGCgG--GGgGCCGCCUgCCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40255 | 0.71 | 0.195802 |
Target: 5'- gGGCGCCCCCuCGGCc--CGGC-CGGAc -3' miRNA: 3'- gCCGCGGGGG-GCCGccuGCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40086 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3' miRNA: 3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 39984 | 0.66 | 0.393403 |
Target: 5'- gGGCGCCCCgCCGGCcgugcucugGGACuuuGCccccuUCGAGa -3' miRNA: 3'- gCCGCGGGG-GGCCG---------CCUGc--CG-----AGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 39688 | 0.66 | 0.401322 |
Target: 5'- gCGcGUGCUCCCCaccGUGGACGGCUg--- -3' miRNA: 3'- -GC-CGCGGGGGGc--CGCCUGCCGAgcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 38629 | 0.69 | 0.275007 |
Target: 5'- cCGGCgcgGCCCUCCGcGgGGACGGCcaCGGc -3' miRNA: 3'- -GCCG---CGGGGGGC-CgCCUGCCGa-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 38587 | 0.69 | 0.26312 |
Target: 5'- gGGCccGCCgCCCCGG-GGACGGCgagGAGg -3' miRNA: 3'- gCCG--CGG-GGGGCCgCCUGCCGag-CUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 38402 | 0.67 | 0.340889 |
Target: 5'- gGGCGCCCCcuCCGGCcucccCGGCUcCGGg -3' miRNA: 3'- gCCGCGGGG--GGCCGccu--GCCGA-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 37370 | 0.66 | 0.41746 |
Target: 5'- cCGGCuccgaCCCUCCGGCcGACGGCcgCGu- -3' miRNA: 3'- -GCCGc----GGGGGGCCGcCUGCCGa-GCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 37174 | 0.68 | 0.28111 |
Target: 5'- cCGGCGCCCgCC-GCGGccccGCGGCccUCGGc -3' miRNA: 3'- -GCCGCGGGgGGcCGCC----UGCCG--AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36924 | 0.73 | 0.147521 |
Target: 5'- aGGCGCCCUCCGccGCGGccGCGGCUUc-- -3' miRNA: 3'- gCCGCGGGGGGC--CGCC--UGCCGAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36717 | 0.66 | 0.401322 |
Target: 5'- ---aGCCCgCCGccGCGaGGCGGCUCGAu -3' miRNA: 3'- gccgCGGGgGGC--CGC-CUGCCGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36632 | 0.68 | 0.293637 |
Target: 5'- uCGGCGCCCggCGGCGG-CGGCg---- -3' miRNA: 3'- -GCCGCGGGggGCCGCCuGCCGagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36507 | 0.69 | 0.246076 |
Target: 5'- uCGGUgaGCCCgggCCGGCGGcGCGGcCUCGGAc -3' miRNA: 3'- -GCCG--CGGGg--GGCCGCC-UGCC-GAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36387 | 0.66 | 0.401322 |
Target: 5'- cCGGgGCCCCCggCGGCcccGGGC-GCUCGu- -3' miRNA: 3'- -GCCgCGGGGG--GCCG---CCUGcCGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 36264 | 0.68 | 0.300063 |
Target: 5'- cCGG-GUCCCCCGGuCGGGCucuccaucagGGCUcCGAGc -3' miRNA: 3'- -GCCgCGGGGGGCC-GCCUG----------CCGA-GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 33910 | 0.72 | 0.174194 |
Target: 5'- -cGCGCCUccgcgUCCGGCGGGCGGaUCGAGg -3' miRNA: 3'- gcCGCGGG-----GGGCCGCCUGCCgAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 33224 | 0.72 | 0.154738 |
Target: 5'- gCGGgGCgCCCCGGCGGGCGGga-GGGg -3' miRNA: 3'- -GCCgCGgGGGGCCGCCUGCCgagCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 31740 | 0.67 | 0.370263 |
Target: 5'- aGGCGCCCgCgCCGG-GGACGcGCcugCGGc -3' miRNA: 3'- gCCGCGGG-G-GGCCgCCUGC-CGa--GCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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