Results 121 - 140 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 115553 | 0.67 | 0.331712 |
Target: 5'- aCGGCguacucGCCCgCgGGCGGGCGcgcgggcaggucgcGCUCGAGc -3' miRNA: 3'- -GCCG------CGGGgGgCCGCCUGC--------------CGAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 51577 | 0.67 | 0.326847 |
Target: 5'- uCGGC-CCCCCUcgggcgGGUGGACGGCg---- -3' miRNA: 3'- -GCCGcGGGGGG------CCGCCUGCCGagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 40086 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCggggccggCCCCGGCgaGGACGGggaCUCu-- -3' miRNA: 3'- gCCGCGG--------GGGGCCG--CCUGCC---GAGcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 78331 | 0.67 | 0.348072 |
Target: 5'- aCGaGCGCCCCggGGCGGGCGcGggCGAc -3' miRNA: 3'- -GC-CGCGGGGggCCGCCUGC-CgaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 5392 | 0.67 | 0.354629 |
Target: 5'- gGGCGCCCcgccgucCCCGGCGa--GGC-CGAGu -3' miRNA: 3'- gCCGCGGG-------GGGCCGCcugCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 31219 | 0.67 | 0.370263 |
Target: 5'- aGGCcgGgCCCCCGGcCGGcCGGCccggCGAGc -3' miRNA: 3'- gCCG--CgGGGGGCC-GCCuGCCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 14253 | 0.67 | 0.370263 |
Target: 5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3' miRNA: 3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 139268 | 0.67 | 0.36276 |
Target: 5'- cCGcGCGCUCCgaCGGCGGACGcGCcgcccUCGGc -3' miRNA: 3'- -GC-CGCGGGGg-GCCGCCUGC-CG-----AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 57290 | 0.67 | 0.36276 |
Target: 5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3' miRNA: 3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 56350 | 0.67 | 0.36276 |
Target: 5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3' miRNA: 3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 77887 | 0.67 | 0.36276 |
Target: 5'- gCGuGCGCCCCCCGcucaGCGGcgagacGCGGCccaCGGc -3' miRNA: 3'- -GC-CGCGGGGGGC----CGCC------UGCCGa--GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 50428 | 0.67 | 0.360529 |
Target: 5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3' miRNA: 3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 69066 | 0.67 | 0.355362 |
Target: 5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3' miRNA: 3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 142270 | 0.67 | 0.355362 |
Target: 5'- gGaGCGCCCcguCCCGGCGGccagacCGGC-CGGGa -3' miRNA: 3'- gC-CGCGGG---GGGCCGCCu-----GCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 131506 | 0.67 | 0.355362 |
Target: 5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3' miRNA: 3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 127912 | 0.67 | 0.355362 |
Target: 5'- gGGgGCCCCUCGGggagcggGGGCGGCgagaCGGg -3' miRNA: 3'- gCCgCGGGGGGCCg------CCUGCCGa---GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 107035 | 0.67 | 0.355362 |
Target: 5'- gCGGCGCggCCCCUGGCcGGCGaGC-CGGc -3' miRNA: 3'- -GCCGCG--GGGGGCCGcCUGC-CGaGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 86806 | 0.67 | 0.355362 |
Target: 5'- gCGGgGCCuCCCCGGCGccCGGCccagugCGGc -3' miRNA: 3'- -GCCgCGG-GGGGCCGCcuGCCGa-----GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 81418 | 0.67 | 0.355362 |
Target: 5'- uGGCGUCCCCgccgaggucgCGGCGcagcgaGACGGCgcacggCGAGa -3' miRNA: 3'- gCCGCGGGGG----------GCCGC------CUGCCGa-----GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 55474 | 0.67 | 0.355362 |
Target: 5'- gGGCGCgCgCCCGGCgccgcGGACGGC-Ca-- -3' miRNA: 3'- gCCGCGgG-GGGCCG-----CCUGCCGaGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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