Results 101 - 120 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29641 | 5' | -67.3 | NC_006151.1 | + | 9385 | 0.67 | 0.348072 |
Target: 5'- gGGgGCCCCCCGcGCGGGuCGGg----- -3' miRNA: 3'- gCCgCGGGGGGC-CGCCU-GCCgagcuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 20113 | 0.67 | 0.348072 |
Target: 5'- gGGCGCCCCggcgacggggCUGGgGGGCgGGCgccgCGGGg -3' miRNA: 3'- gCCGCGGGG----------GGCCgCCUG-CCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 66051 | 0.67 | 0.340889 |
Target: 5'- cCGGUGCCuguccaggaCCCC-GCGGACGGC-CGc- -3' miRNA: 3'- -GCCGCGG---------GGGGcCGCCUGCCGaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 58079 | 0.67 | 0.340889 |
Target: 5'- -cGCGCCCUC--GCGGGCGaGCUCGGg -3' miRNA: 3'- gcCGCGGGGGgcCGCCUGC-CGAGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 134805 | 0.67 | 0.340889 |
Target: 5'- gCGGCgGCCCgCgCCGGaccCGGACGGUggCGAc -3' miRNA: 3'- -GCCG-CGGG-G-GGCC---GCCUGCCGa-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 131506 | 0.67 | 0.355362 |
Target: 5'- aGGaGCCCCgCgCGGgGGaACGGCUgGAAg -3' miRNA: 3'- gCCgCGGGG-G-GCCgCC-UGCCGAgCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 142270 | 0.67 | 0.355362 |
Target: 5'- gGaGCGCCCcguCCCGGCGGccagacCGGC-CGGGa -3' miRNA: 3'- gC-CGCGGG---GGGCCGCCu-----GCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 75454 | 0.67 | 0.370263 |
Target: 5'- uGGCGCgCguagcggUCGGCGGcCGGCUUGAAg -3' miRNA: 3'- gCCGCGgGg------GGCCGCCuGCCGAGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 127694 | 0.67 | 0.370263 |
Target: 5'- gCGGCGCUCUCCuGC-GACGaGCUCGu- -3' miRNA: 3'- -GCCGCGGGGGGcCGcCUGC-CGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 76793 | 0.67 | 0.370263 |
Target: 5'- uCGGCGCCguacagcgCCCCGGCgaGGGCGGgCgCGu- -3' miRNA: 3'- -GCCGCGG--------GGGGCCG--CCUGCC-GaGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 9884 | 0.67 | 0.370263 |
Target: 5'- gGGCGCUuccuCCCCGGCGGucCGGgaaGAAa -3' miRNA: 3'- gCCGCGG----GGGGCCGCCu-GCCgagCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 31740 | 0.67 | 0.370263 |
Target: 5'- aGGCGCCCgCgCCGG-GGACGcGCcugCGGc -3' miRNA: 3'- gCCGCGGG-G-GGCCgCCUGC-CGa--GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 31219 | 0.67 | 0.370263 |
Target: 5'- aGGCcgGgCCCCCGGcCGGcCGGCccggCGAGc -3' miRNA: 3'- gCCG--CgGGGGGCC-GCCuGCCGa---GCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 14253 | 0.67 | 0.370263 |
Target: 5'- gGGgGaUCCCCCGGUcggGGugGGC-CGGGa -3' miRNA: 3'- gCCgC-GGGGGGCCG---CCugCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 139268 | 0.67 | 0.36276 |
Target: 5'- cCGcGCGCUCCgaCGGCGGACGcGCcgcccUCGGc -3' miRNA: 3'- -GC-CGCGGGGg-GCCGCCUGC-CG-----AGCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 57290 | 0.67 | 0.36276 |
Target: 5'- gGGCGUCCagcgcggcCuuGGCGGcGCGGC-CGAAg -3' miRNA: 3'- gCCGCGGG--------GggCCGCC-UGCCGaGCUU- -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 56350 | 0.67 | 0.36276 |
Target: 5'- gCGcGCGCCCCgCCGGCGcGGaaGCUaCGGc -3' miRNA: 3'- -GC-CGCGGGG-GGCCGC-CUgcCGA-GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 77887 | 0.67 | 0.36276 |
Target: 5'- gCGuGCGCCCCCCGcucaGCGGcgagacGCGGCccaCGGc -3' miRNA: 3'- -GC-CGCGGGGGGC----CGCC------UGCCGa--GCUu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 50428 | 0.67 | 0.360529 |
Target: 5'- aGGCGCCCCugcgcgCCGGCGGccugggcaccgcccGCGggcGCUCGc- -3' miRNA: 3'- gCCGCGGGG------GGCCGCC--------------UGC---CGAGCuu -5' |
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29641 | 5' | -67.3 | NC_006151.1 | + | 69066 | 0.67 | 0.355362 |
Target: 5'- gCGGCuccucGUCCCCCaGCGGcACGGCcagcUCGGc -3' miRNA: 3'- -GCCG-----CGGGGGGcCGCC-UGCCG----AGCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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