Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29643 | 5' | -46.4 | NC_006151.1 | + | 131769 | 0.66 | 0.999872 |
Target: 5'- gGUCgcg---ACCGCGGccGCGGGCGCc -3' miRNA: 3'- -UAGaauauaUGGCGUUcaCGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 120809 | 0.66 | 0.999872 |
Target: 5'- --------cGCCGCGcgcgaGGUGCuGGACGCg -3' miRNA: 3'- uagaauauaUGGCGU-----UCACG-CUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 115204 | 0.66 | 0.999872 |
Target: 5'- --------cGCCGCGGGcGCGcGCGCg -3' miRNA: 3'- uagaauauaUGGCGUUCaCGCuUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 100470 | 0.66 | 0.999872 |
Target: 5'- ----------gCGCGAGUGCGAgGCGCu -3' miRNA: 3'- uagaauauaugGCGUUCACGCU-UGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 94935 | 0.66 | 0.999872 |
Target: 5'- ----cGUGcuCCGCGA-UGCGGACGCg -3' miRNA: 3'- uagaaUAUauGGCGUUcACGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 55425 | 0.66 | 0.999872 |
Target: 5'- --------cGCCGCGcAG-GCGGGCGCg -3' miRNA: 3'- uagaauauaUGGCGU-UCaCGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 19238 | 0.66 | 0.999872 |
Target: 5'- --------aGCUGCGAGUGgaagcCGAGCGCg -3' miRNA: 3'- uagaauauaUGGCGUUCAC-----GCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 58831 | 0.66 | 0.999903 |
Target: 5'- cGUCgcg---GCacaGCAGGUGCGccAGCGCg -3' miRNA: 3'- -UAGaauauaUGg--CGUUCACGC--UUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 37747 | 0.66 | 0.999903 |
Target: 5'- cUCUgggcccUGCCGCAcGcgGUGAGCGCc -3' miRNA: 3'- uAGAauau--AUGGCGUuCa-CGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 110903 | 0.66 | 0.999925 |
Target: 5'- -gCUUGUcgugcgcGUGCCGCAGGUucaCGAGgGCc -3' miRNA: 3'- uaGAAUA-------UAUGGCGUUCAc--GCUUgCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 33118 | 0.66 | 0.999927 |
Target: 5'- gGUCUgggcgcGUGCCGCGggccgAGUGuCGGGCGa -3' miRNA: 3'- -UAGAaua---UAUGGCGU-----UCAC-GCUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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