miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29643 5' -46.4 NC_006151.1 + 86736 0.68 0.999298
Target:  5'- --------cGCCGCGAGgccgGCGuGCGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCa---CGCuUGCG- -5'
29643 5' -46.4 NC_006151.1 + 85067 0.67 0.999553
Target:  5'- --------cGCUGCAGGccUGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUC--ACGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 84763 0.68 0.998926
Target:  5'- --------cGCCGcCGAGgagGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGC-GUUCa--CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 79510 0.84 0.531172
Target:  5'- uAUUUUAUAUACaaCAAGUGCGAACGCc -3'
miRNA:   3'- -UAGAAUAUAUGgcGUUCACGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 76640 0.72 0.976284
Target:  5'- cAUCgUGUGgcgacgACCGC--GUGCGGGCGCg -3'
miRNA:   3'- -UAGaAUAUa-----UGGCGuuCACGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 72915 0.68 0.998684
Target:  5'- cUCUUGgcgACCGCcucgGCGGGCGUg -3'
miRNA:   3'- uAGAAUauaUGGCGuucaCGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 71094 0.71 0.990151
Target:  5'- --------cGCCGCGGGcGCGGGCGCc -3'
miRNA:   3'- uagaauauaUGGCGUUCaCGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 58831 0.66 0.999903
Target:  5'- cGUCgcg---GCacaGCAGGUGCGccAGCGCg -3'
miRNA:   3'- -UAGaauauaUGg--CGUUCACGC--UUGCG- -5'
29643 5' -46.4 NC_006151.1 + 57971 0.7 0.993639
Target:  5'- ----cGUGaGCCGguGGgcgGCGAGCGCg -3'
miRNA:   3'- uagaaUAUaUGGCguUCa--CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 56658 0.66 0.999833
Target:  5'- ----cGUGUACCGCuGGUGgaCGAcgGCGCc -3'
miRNA:   3'- uagaaUAUAUGGCGuUCAC--GCU--UGCG- -5'
29643 5' -46.4 NC_006151.1 + 56579 0.68 0.998398
Target:  5'- --------cGCCGCccgacgggcuGGUGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGu---------UCACGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 55425 0.66 0.999872
Target:  5'- --------cGCCGCGcAG-GCGGGCGCg -3'
miRNA:   3'- uagaauauaUGGCGU-UCaCGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 45421 0.67 0.999784
Target:  5'- uGUgUUGUGgGCCGgGGGUucGCGGGCGUc -3'
miRNA:   3'- -UAgAAUAUaUGGCgUUCA--CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 45354 0.67 0.999553
Target:  5'- ----cGUGUgGCC-CGAGUGUGAGCGUg -3'
miRNA:   3'- uagaaUAUA-UGGcGUUCACGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 37955 0.67 0.999553
Target:  5'- ----cGUGccCCGCGAGcugGCGGACGCc -3'
miRNA:   3'- uagaaUAUauGGCGUUCa--CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 37747 0.66 0.999903
Target:  5'- cUCUgggcccUGCCGCAcGcgGUGAGCGCc -3'
miRNA:   3'- uAGAauau--AUGGCGUuCa-CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 33118 0.66 0.999927
Target:  5'- gGUCUgggcgcGUGCCGCGggccgAGUGuCGGGCGa -3'
miRNA:   3'- -UAGAaua---UAUGGCGU-----UCAC-GCUUGCg -5'
29643 5' -46.4 NC_006151.1 + 32786 0.68 0.999298
Target:  5'- --------gGCCGCGGGgggccgaaGCGGACGCg -3'
miRNA:   3'- uagaauauaUGGCGUUCa-------CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 32074 0.69 0.996672
Target:  5'- --------cGCCGCGAccgGCGAACGCa -3'
miRNA:   3'- uagaauauaUGGCGUUca-CGCUUGCG- -5'
29643 5' -46.4 NC_006151.1 + 30749 0.67 0.999647
Target:  5'- ------aGUGCCGCGGGcgggGCGGGgGCa -3'
miRNA:   3'- uagaauaUAUGGCGUUCa---CGCUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.