Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29643 | 5' | -46.4 | NC_006151.1 | + | 32786 | 0.68 | 0.999298 |
Target: 5'- --------gGCCGCGGGgggccgaaGCGGACGCg -3' miRNA: 3'- uagaauauaUGGCGUUCa-------CGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 85067 | 0.67 | 0.999553 |
Target: 5'- --------cGCUGCAGGccUGCGGGCGCc -3' miRNA: 3'- uagaauauaUGGCGUUC--ACGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 37955 | 0.67 | 0.999553 |
Target: 5'- ----cGUGccCCGCGAGcugGCGGACGCc -3' miRNA: 3'- uagaaUAUauGGCGUUCa--CGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 45354 | 0.67 | 0.999553 |
Target: 5'- ----cGUGUgGCC-CGAGUGUGAGCGUg -3' miRNA: 3'- uagaaUAUA-UGGcGUUCACGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 136688 | 0.67 | 0.999647 |
Target: 5'- uUCUU-----CCGCcacGUGCGGGCGCa -3' miRNA: 3'- uAGAAuauauGGCGuu-CACGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 30749 | 0.67 | 0.999647 |
Target: 5'- ------aGUGCCGCGGGcgggGCGGGgGCa -3' miRNA: 3'- uagaauaUAUGGCGUUCa---CGCUUgCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 141407 | 0.67 | 0.999723 |
Target: 5'- ----cGUGUcCgGCGaucGGUGCGGGCGCg -3' miRNA: 3'- uagaaUAUAuGgCGU---UCACGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 89502 | 0.67 | 0.999723 |
Target: 5'- ------gGUACgCGCGGGUGUG-GCGCa -3' miRNA: 3'- uagaauaUAUG-GCGUUCACGCuUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 102592 | 0.67 | 0.999784 |
Target: 5'- ------aGUcCCGCGAGUcgcaGCGGGCGCu -3' miRNA: 3'- uagaauaUAuGGCGUUCA----CGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 45421 | 0.67 | 0.999784 |
Target: 5'- uGUgUUGUGgGCCGgGGGUucGCGGGCGUc -3' miRNA: 3'- -UAgAAUAUaUGGCgUUCA--CGCUUGCG- -5' |
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29643 | 5' | -46.4 | NC_006151.1 | + | 33118 | 0.66 | 0.999927 |
Target: 5'- gGUCUgggcgcGUGCCGCGggccgAGUGuCGGGCGa -3' miRNA: 3'- -UAGAaua---UAUGGCGU-----UCAC-GCUUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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