miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29645 3' -44.3 NC_006151.1 + 112225 0.66 0.999999
Target:  5'- gUCGCGcUCGCucgucgccgccGCCAGgcGCUGcGUGUGg -3'
miRNA:   3'- -AGUGCaAGCG-----------UGGUUaaCGAU-UAUAC- -5'
29645 3' -44.3 NC_006151.1 + 73695 0.66 0.999999
Target:  5'- gCGCGgcucUGCGCCGcgUGCUGGg--- -3'
miRNA:   3'- aGUGCaa--GCGUGGUuaACGAUUauac -5'
29645 3' -44.3 NC_006151.1 + 13796 0.66 0.999998
Target:  5'- -aGCGUUCGCACU---UGCgguAUAUa -3'
miRNA:   3'- agUGCAAGCGUGGuuaACGau-UAUAc -5'
29645 3' -44.3 NC_006151.1 + 13517 0.66 0.999998
Target:  5'- -aGCGUUCGCACU---UGCgguAUAUa -3'
miRNA:   3'- agUGCAAGCGUGGuuaACGau-UAUAc -5'
29645 3' -44.3 NC_006151.1 + 69561 0.66 0.999998
Target:  5'- cCACGUggcugCGCACCGggUGCc------ -3'
miRNA:   3'- aGUGCAa----GCGUGGUuaACGauuauac -5'
29645 3' -44.3 NC_006151.1 + 76168 0.68 0.99994
Target:  5'- gCACGUUgCGCGCgAGcUGCUGG-AUGg -3'
miRNA:   3'- aGUGCAA-GCGUGgUUaACGAUUaUAC- -5'
29645 3' -44.3 NC_006151.1 + 13237 0.68 0.999919
Target:  5'- -aGCGUUCGCACUuGUUGU--AUAUa -3'
miRNA:   3'- agUGCAAGCGUGGuUAACGauUAUAc -5'
29645 3' -44.3 NC_006151.1 + 121428 0.69 0.999816
Target:  5'- gUCGCGgggcUCGCGCCGGccucGCUGGUGc- -3'
miRNA:   3'- -AGUGCa---AGCGUGGUUaa--CGAUUAUac -5'
29645 3' -44.3 NC_006151.1 + 53032 0.69 0.999693
Target:  5'- gCAgGUUCGC-CgGGUUGUUGAUGUa -3'
miRNA:   3'- aGUgCAAGCGuGgUUAACGAUUAUAc -5'
29645 3' -44.3 NC_006151.1 + 84219 0.71 0.998811
Target:  5'- aUCACGcUCGUGCCcc-UGCUGGUGUu -3'
miRNA:   3'- -AGUGCaAGCGUGGuuaACGAUUAUAc -5'
29645 3' -44.3 NC_006151.1 + 98119 0.74 0.989184
Target:  5'- gCGCGcgCGCGCCGAgcccacgGUUAGUGUGc -3'
miRNA:   3'- aGUGCaaGCGUGGUUaa-----CGAUUAUAC- -5'
29645 3' -44.3 NC_006151.1 + 79471 1.07 0.050928
Target:  5'- gUCACGUUCGCACCAAUUGCUAAUAUa -3'
miRNA:   3'- -AGUGCAAGCGUGGUUAACGAUUAUAc -5'
29645 3' -44.3 NC_006151.1 + 28699 1.07 0.050928
Target:  5'- gUCACGUUCGCACCAAUUGCUAAUAUa -3'
miRNA:   3'- -AGUGCAAGCGUGGUUAACGAUUAUAc -5'
29645 3' -44.3 NC_006151.1 + 28420 1.07 0.050928
Target:  5'- gUCACGUUCGCACCAAUUGCUAAUAUa -3'
miRNA:   3'- -AGUGCAAGCGUGGUUAACGAUUAUAc -5'
29645 3' -44.3 NC_006151.1 + 28978 1.11 0.030614
Target:  5'- gUCACGUUCGCACCAAUUGCUAAUAUGu -3'
miRNA:   3'- -AGUGCAAGCGUGGUUAACGAUUAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.