miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29645 5' -42.5 NC_006151.1 + 141685 0.66 1
Target:  5'- uGUCUgccucccacgGCGGCuGGcgGCGGACGCg -3'
miRNA:   3'- -UAGAauaua-----UGUUGuUCa-CGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 115017 0.67 1
Target:  5'- -gCUUGUGguagACgGugAGGUGCGGcagGCGCg -3'
miRNA:   3'- uaGAAUAUa---UG-UugUUCACGCU---UGCG- -5'
29645 5' -42.5 NC_006151.1 + 70160 0.67 1
Target:  5'- ------cGUGC-ACGAGcGCGGGCGCg -3'
miRNA:   3'- uagaauaUAUGuUGUUCaCGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 73935 0.67 1
Target:  5'- ------gGUGCAGCGAgccgucGUGCGuGCGCa -3'
miRNA:   3'- uagaauaUAUGUUGUU------CACGCuUGCG- -5'
29645 5' -42.5 NC_006151.1 + 76791 0.66 1
Target:  5'- aGUCggcgccGUACAgcgccccgGCGAGgGCGGGCGCg -3'
miRNA:   3'- -UAGaaua--UAUGU--------UGUUCaCGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 65035 0.66 1
Target:  5'- ------cGUACGGCAGGgggcccggcggcgGCGGGCGCc -3'
miRNA:   3'- uagaauaUAUGUUGUUCa------------CGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 56585 0.66 1
Target:  5'- ---------cCGACGggcuGGUGCGGACGCg -3'
miRNA:   3'- uagaauauauGUUGU----UCACGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 128222 0.66 1
Target:  5'- ------cGUGCGACGAGcucGUGGGCGCc -3'
miRNA:   3'- uagaauaUAUGUUGUUCa--CGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 74759 0.68 0.999998
Target:  5'- cUCUgg-AUGCAcugcgccACGAGccgcGCGAGCGCg -3'
miRNA:   3'- uAGAauaUAUGU-------UGUUCa---CGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 92552 0.69 0.999995
Target:  5'- cUCg---GUGCAGCAGGUGgcCGAGuCGCu -3'
miRNA:   3'- uAGaauaUAUGUUGUUCAC--GCUU-GCG- -5'
29645 5' -42.5 NC_006151.1 + 84708 0.69 0.999993
Target:  5'- --------aGCGGCAGGUG-GAGCGCg -3'
miRNA:   3'- uagaauauaUGUUGUUCACgCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 95616 0.7 0.99997
Target:  5'- aGUCgggcccGUGCAGCGaggccaGGUGCGAgGCGCg -3'
miRNA:   3'- -UAGaaua--UAUGUUGU------UCACGCU-UGCG- -5'
29645 5' -42.5 NC_006151.1 + 75374 0.7 0.99997
Target:  5'- -cCUUGUugaagaaGUGCAcggcgcgggGCGGGUGCGuGCGCg -3'
miRNA:   3'- uaGAAUA-------UAUGU---------UGUUCACGCuUGCG- -5'
29645 5' -42.5 NC_006151.1 + 22818 0.7 0.999945
Target:  5'- cGUCag--GUGCAgggggcGCGAG-GCGAGCGCg -3'
miRNA:   3'- -UAGaauaUAUGU------UGUUCaCGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 13276 0.71 0.999925
Target:  5'- ----cAUAUuaGCAAUuGGUGCGAACGUg -3'
miRNA:   3'- uagaaUAUA--UGUUGuUCACGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 141407 0.72 0.999707
Target:  5'- ----cGUGUccgGCGAUcGGUGCGGGCGCg -3'
miRNA:   3'- uagaaUAUA---UGUUGuUCACGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 22035 0.72 0.999624
Target:  5'- ------aGUACAGCAGGUGC--GCGCa -3'
miRNA:   3'- uagaauaUAUGUUGUUCACGcuUGCG- -5'
29645 5' -42.5 NC_006151.1 + 90682 0.72 0.999522
Target:  5'- -gCUUGUcccccGCGGCGGGggcgGCGGACGCg -3'
miRNA:   3'- uaGAAUAua---UGUUGUUCa---CGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 88794 0.72 0.999396
Target:  5'- cUCgacg--ACGACGGGcGCGAGCGCg -3'
miRNA:   3'- uAGaauauaUGUUGUUCaCGCUUGCG- -5'
29645 5' -42.5 NC_006151.1 + 90441 0.72 0.999396
Target:  5'- cAUCagcgugAUGCAGCGGGUGgacuCGAGCGCg -3'
miRNA:   3'- -UAGaaua--UAUGUUGUUCAC----GCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.