Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29645 | 5' | -42.5 | NC_006151.1 | + | 141685 | 0.66 | 1 |
Target: 5'- uGUCUgccucccacgGCGGCuGGcgGCGGACGCg -3' miRNA: 3'- -UAGAauaua-----UGUUGuUCa-CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 141407 | 0.72 | 0.999707 |
Target: 5'- ----cGUGUccgGCGAUcGGUGCGGGCGCg -3' miRNA: 3'- uagaaUAUA---UGUUGuUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 128222 | 0.66 | 1 |
Target: 5'- ------cGUGCGACGAGcucGUGGGCGCc -3' miRNA: 3'- uagaauaUAUGUUGUUCa--CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 115017 | 0.67 | 1 |
Target: 5'- -gCUUGUGguagACgGugAGGUGCGGcagGCGCg -3' miRNA: 3'- uaGAAUAUa---UG-UugUUCACGCU---UGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 95616 | 0.7 | 0.99997 |
Target: 5'- aGUCgggcccGUGCAGCGaggccaGGUGCGAgGCGCg -3' miRNA: 3'- -UAGaaua--UAUGUUGU------UCACGCU-UGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 92552 | 0.69 | 0.999995 |
Target: 5'- cUCg---GUGCAGCAGGUGgcCGAGuCGCu -3' miRNA: 3'- uAGaauaUAUGUUGUUCAC--GCUU-GCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 90682 | 0.72 | 0.999522 |
Target: 5'- -gCUUGUcccccGCGGCGGGggcgGCGGACGCg -3' miRNA: 3'- uaGAAUAua---UGUUGUUCa---CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 90441 | 0.72 | 0.999396 |
Target: 5'- cAUCagcgugAUGCAGCGGGUGgacuCGAGCGCg -3' miRNA: 3'- -UAGaaua--UAUGUUGUUCAC----GCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 88794 | 0.72 | 0.999396 |
Target: 5'- cUCgacg--ACGACGGGcGCGAGCGCg -3' miRNA: 3'- uAGaauauaUGUUGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 84708 | 0.69 | 0.999993 |
Target: 5'- --------aGCGGCAGGUG-GAGCGCg -3' miRNA: 3'- uagaauauaUGUUGUUCACgCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 79510 | 1.05 | 0.094076 |
Target: 5'- uAUUUUAUAUACAACAAGUGCGAACGCc -3' miRNA: 3'- -UAGAAUAUAUGUUGUUCACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 76791 | 0.66 | 1 |
Target: 5'- aGUCggcgccGUACAgcgccccgGCGAGgGCGGGCGCg -3' miRNA: 3'- -UAGaaua--UAUGU--------UGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 76760 | 0.73 | 0.999056 |
Target: 5'- --------gGCAGCAGGaagGCGAGCGCg -3' miRNA: 3'- uagaauauaUGUUGUUCa--CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 76640 | 0.74 | 0.997429 |
Target: 5'- cAUCgUGUGgcgACGACcgcGUGCGGGCGCg -3' miRNA: 3'- -UAGaAUAUa--UGUUGuu-CACGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 75374 | 0.7 | 0.99997 |
Target: 5'- -cCUUGUugaagaaGUGCAcggcgcgggGCGGGUGCGuGCGCg -3' miRNA: 3'- uaGAAUA-------UAUGU---------UGUUCACGCuUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 74759 | 0.68 | 0.999998 |
Target: 5'- cUCUgg-AUGCAcugcgccACGAGccgcGCGAGCGCg -3' miRNA: 3'- uAGAauaUAUGU-------UGUUCa---CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 73935 | 0.67 | 1 |
Target: 5'- ------gGUGCAGCGAgccgucGUGCGuGCGCa -3' miRNA: 3'- uagaauaUAUGUUGUU------CACGCuUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 70160 | 0.67 | 1 |
Target: 5'- ------cGUGC-ACGAGcGCGGGCGCg -3' miRNA: 3'- uagaauaUAUGuUGUUCaCGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 65035 | 0.66 | 1 |
Target: 5'- ------cGUACGGCAGGgggcccggcggcgGCGGGCGCc -3' miRNA: 3'- uagaauaUAUGUUGUUCa------------CGCUUGCG- -5' |
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29645 | 5' | -42.5 | NC_006151.1 | + | 58831 | 0.74 | 0.997429 |
Target: 5'- cGUCgcggc-ACAGCAGGUGCGccAGCGCg -3' miRNA: 3'- -UAGaauauaUGUUGUUCACGC--UUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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