miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 3' -68.8 NC_006151.1 + 14234 0.67 0.334031
Target:  5'- aCCCGACgguaCCGgaUGCGGGGGauCCCCCggUCg -3'
miRNA:   3'- -GGGCUG----GGC--GCGCCCCCc-GGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 136631 0.67 0.333349
Target:  5'- aCgGACCC-CGCGGcgcccguGGGGCgcucgCCCCUCg -3'
miRNA:   3'- gGgCUGGGcGCGCC-------CCCCG-----GGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 142838 0.67 0.327252
Target:  5'- uCCCGccCCCGCGUuuuccauuGGggugaauggggaGGGGCCCCCagCg -3'
miRNA:   3'- -GGGCu-GGGCGCG--------CC------------CCCCGGGGGagG- -5'
29647 3' -68.8 NC_006151.1 + 111354 0.67 0.327252
Target:  5'- gCgGAUgggCGCGCGGGgcgaGGGCCCCUcgCCg -3'
miRNA:   3'- gGgCUGg--GCGCGCCC----CCCGGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 5770 0.67 0.327252
Target:  5'- aCCGACCgGguccccccuCGCGGGGGaCCaUCUCCg -3'
miRNA:   3'- gGGCUGGgC---------GCGCCCCCcGGgGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 78955 0.67 0.347898
Target:  5'- gCCCG-CCCGCcuCGGucucGGuGCCCCCcCCg -3'
miRNA:   3'- -GGGCuGGGCGc-GCCc---CC-CGGGGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 133004 0.67 0.354983
Target:  5'- uCCCu-UCCGCcCGGGGGuGCUCUCgUCCa -3'
miRNA:   3'- -GGGcuGGGCGcGCCCCC-CGGGGG-AGG- -5'
29647 3' -68.8 NC_006151.1 + 49622 0.67 0.365073
Target:  5'- gCgGugCUGCGCgaguggGGGuGGGCCguggaggaggucgagCCCUCCg -3'
miRNA:   3'- gGgCugGGCGCG------CCC-CCCGG---------------GGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 112090 0.67 0.36217
Target:  5'- cCCCGGgUCGgGCGGcggacuuuauaGGGcGCCCagCUCCa -3'
miRNA:   3'- -GGGCUgGGCgCGCC-----------CCC-CGGGg-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 72028 0.67 0.36217
Target:  5'- -gCGcCCCGCGCGGGc-GCCCCg-CCg -3'
miRNA:   3'- ggGCuGGGCGCGCCCccCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 105448 0.67 0.36217
Target:  5'- aCUCGGCgCGCGCc-GGGGCCCugggcgacuuCUUCCg -3'
miRNA:   3'- -GGGCUGgGCGCGccCCCCGGG----------GGAGG- -5'
29647 3' -68.8 NC_006151.1 + 48531 0.67 0.36217
Target:  5'- gCCGcCgCUGCGCuauaauGGaGGGCCCCCcgCCg -3'
miRNA:   3'- gGGCuG-GGCGCGc-----CC-CCCGGGGGa-GG- -5'
29647 3' -68.8 NC_006151.1 + 37258 0.67 0.36217
Target:  5'- gCCCGGCCCccGCGCaGGaaGCgCCgCUCCa -3'
miRNA:   3'- -GGGCUGGG--CGCGcCCccCGgGG-GAGG- -5'
29647 3' -68.8 NC_006151.1 + 5871 0.67 0.36217
Target:  5'- gCCCgGGgCCGC-C-GGGGGCCCCggCCu -3'
miRNA:   3'- -GGG-CUgGGCGcGcCCCCCGGGGgaGG- -5'
29647 3' -68.8 NC_006151.1 + 54145 0.67 0.361447
Target:  5'- cCCCGGCggcgCCGCGgaggaGGcuaauaaccuguuGGGcGCCCCCUCg -3'
miRNA:   3'- -GGGCUG----GGCGCg----CC-------------CCC-CGGGGGAGg -5'
29647 3' -68.8 NC_006151.1 + 101696 0.67 0.361447
Target:  5'- -aCGAgCCGUacguggaGCGGGcGGUgCCCUCCg -3'
miRNA:   3'- ggGCUgGGCG-------CGCCCcCCGgGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 86308 0.67 0.361447
Target:  5'- aCUG-CCCGCaGCuGGGGGCCgugcucgCCCgcgCCg -3'
miRNA:   3'- gGGCuGGGCG-CGcCCCCCGG-------GGGa--GG- -5'
29647 3' -68.8 NC_006151.1 + 11232 0.67 0.361447
Target:  5'- uCCCGGgCCGCgagggccGCGGcGGcGaCCCCCUUCc -3'
miRNA:   3'- -GGGCUgGGCG-------CGCCcCC-C-GGGGGAGG- -5'
29647 3' -68.8 NC_006151.1 + 142095 0.67 0.354983
Target:  5'- gCCCgcagGACCUGCGCGGGcuGGGUgaagCCCaCCg -3'
miRNA:   3'- -GGG----CUGGGCGCGCCC--CCCGg---GGGaGG- -5'
29647 3' -68.8 NC_006151.1 + 38985 0.67 0.354983
Target:  5'- cCCUGGCgcacaucgCCGCGCGccgcGGcGCCCCgCUCCg -3'
miRNA:   3'- -GGGCUG--------GGCGCGCc---CCcCGGGG-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.