Results 41 - 60 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29647 | 3' | -68.8 | NC_006151.1 | + | 84534 | 0.66 | 0.399595 |
Target: 5'- cCCCGuuCCC-CGUGGGcuucuGGGCCCgC-CCg -3' miRNA: 3'- -GGGCu-GGGcGCGCCC-----CCCGGGgGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 83357 | 0.66 | 0.402694 |
Target: 5'- cCCCGGCgCGCGCGcGGGcgcgcaggcgccgcaGGUgCUCgUCCg -3' miRNA: 3'- -GGGCUGgGCGCGC-CCC---------------CCGgGGG-AGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 66520 | 0.66 | 0.406589 |
Target: 5'- gCCgGGCUCGCGCGcgccgcgcucuucGGGGGCgCgCgcggCCg -3' miRNA: 3'- -GGgCUGGGCGCGC-------------CCCCCGgGgGa---GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 36007 | 0.66 | 0.407371 |
Target: 5'- gUCCGGcCCCGacgGCGGcagccaGGGCUCCCggcgCCg -3' miRNA: 3'- -GGGCU-GGGCg--CGCCc-----CCCGGGGGa---GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 121447 | 0.66 | 0.407371 |
Target: 5'- cCUCGcugguGCCCGCGgagcUGGGGGGCaagcgCCCgCCc -3' miRNA: 3'- -GGGC-----UGGGCGC----GCCCCCCGg----GGGaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 17314 | 0.66 | 0.391915 |
Target: 5'- gCCG-UCCGC-CGGGGGGCgCCgCgUCa -3' miRNA: 3'- gGGCuGGGCGcGCCCCCCG-GG-GgAGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 15884 | 0.66 | 0.391915 |
Target: 5'- gCCG-CCCGC-CGGGGGacgcGCgCCCCgacgcggCCc -3' miRNA: 3'- gGGCuGGGCGcGCCCCC----CG-GGGGa------GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 4789 | 0.66 | 0.369458 |
Target: 5'- gCCCGGCCgCgGCGCGGuagcGGGCCgCggCCu -3' miRNA: 3'- -GGGCUGG-G-CGCGCCc---CCCGGgGgaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 5370 | 0.66 | 0.369458 |
Target: 5'- gCCGGCggggCUGUcucuGCGGGGGcGCCCCg-CCg -3' miRNA: 3'- gGGCUG----GGCG----CGCCCCC-CGGGGgaGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 50395 | 0.66 | 0.369458 |
Target: 5'- cCCCGcgguCCuCGCGCGGcccccccgacgaGGaGGCgCCCCUgCg -3' miRNA: 3'- -GGGCu---GG-GCGCGCC------------CC-CCG-GGGGAgG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 106790 | 0.66 | 0.369458 |
Target: 5'- aCCUGGCCgCG-GCGGcggugcucgucGGGGCCCCgCUg- -3' miRNA: 3'- -GGGCUGG-GCgCGCC-----------CCCCGGGG-GAgg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 136819 | 0.66 | 0.369458 |
Target: 5'- gCCGACgcgCCGCGCGGGcucugcgacGcGGCCgCCggCCu -3' miRNA: 3'- gGGCUG---GGCGCGCCC---------C-CCGGgGGa-GG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 37330 | 0.66 | 0.375359 |
Target: 5'- aCCGAcgggccgcugcucacCCCGCuCGGGGaGCCcuggcccggcuccgaCCCUCCg -3' miRNA: 3'- gGGCU---------------GGGCGcGCCCCcCGG---------------GGGAGG- -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 6850 | 0.66 | 0.376845 |
Target: 5'- gCCCGGCCCcCGCGGcGGccaucuuGCCCCaUCg -3' miRNA: 3'- -GGGCUGGGcGCGCC-CCc------CGGGGgAGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 130925 | 0.66 | 0.383578 |
Target: 5'- gCCgGGCCCGCgggggcgggggcgGCGGGGGGUCgCg--- -3' miRNA: 3'- -GGgCUGGGCG-------------CGCCCCCCGGgGgagg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 63745 | 0.66 | 0.384331 |
Target: 5'- cUCCGGCgCGU-CGGcGGGGCgUCCUCg -3' miRNA: 3'- -GGGCUGgGCGcGCC-CCCCGgGGGAGg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 67951 | 0.66 | 0.384331 |
Target: 5'- gCCC-ACCaCGCGCcGGGGGCCaggaCCa-- -3' miRNA: 3'- -GGGcUGG-GCGCGcCCCCCGGg---GGagg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 77529 | 0.66 | 0.384331 |
Target: 5'- cCUCGGCCgCGCGUGGGccGCCCCg--- -3' miRNA: 3'- -GGGCUGG-GCGCGCCCccCGGGGgagg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 114314 | 0.66 | 0.384331 |
Target: 5'- -aCGugCUGCGCGacGGGGGCCUgCg-- -3' miRNA: 3'- ggGCugGGCGCGC--CCCCCGGGgGagg -5' |
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29647 | 3' | -68.8 | NC_006151.1 | + | 135915 | 0.66 | 0.385085 |
Target: 5'- cCCCGGCggucgugcgcgcgcuCUGcCGCGGGGaGCCCCUcgcggcgcgggacgUCCu -3' miRNA: 3'- -GGGCUG---------------GGC-GCGCCCCcCGGGGG--------------AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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