miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29647 5' -53.2 NC_006151.1 + 33897 0.66 0.959685
Target:  5'- -gGGGcgGggGCCUcgcgCCUCCGcguccGGCGGg -3'
miRNA:   3'- aaCCUuaCuuUGGAa---GGGGGC-----UCGCU- -5'
29647 5' -53.2 NC_006151.1 + 42732 0.67 0.942857
Target:  5'- -gGGGcgGGGACCcccaCCCCCGuGCa- -3'
miRNA:   3'- aaCCUuaCUUUGGaa--GGGGGCuCGcu -5'
29647 5' -53.2 NC_006151.1 + 109922 0.67 0.941435
Target:  5'- ------aGAGACCUccgccgccggccucUCCCCUGGGCGGc -3'
miRNA:   3'- aaccuuaCUUUGGA--------------AGGGGGCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 109701 0.67 0.938029
Target:  5'- -aGGGA-GAGGCCgagaCCCCG-GCGAc -3'
miRNA:   3'- aaCCUUaCUUUGGaag-GGGGCuCGCU- -5'
29647 5' -53.2 NC_006151.1 + 87070 0.67 0.932947
Target:  5'- -cGGGGaGgcGCCgccCCCCgCGAGCGAc -3'
miRNA:   3'- aaCCUUaCuuUGGaa-GGGG-GCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 96850 0.67 0.92761
Target:  5'- -aGGGcgggGAAACCgcgCCCgCCGGGCGc -3'
miRNA:   3'- aaCCUua--CUUUGGaa-GGG-GGCUCGCu -5'
29647 5' -53.2 NC_006151.1 + 142744 0.67 0.92761
Target:  5'- cUGGccgGggGCCcagcucUCCCCCGGGCc- -3'
miRNA:   3'- aACCuuaCuuUGGa-----AGGGGGCUCGcu -5'
29647 5' -53.2 NC_006151.1 + 17194 0.67 0.92761
Target:  5'- gUGGAucGggGCCgUgCCCCGGGCc- -3'
miRNA:   3'- aACCUuaCuuUGGaAgGGGGCUCGcu -5'
29647 5' -53.2 NC_006151.1 + 90669 0.68 0.897112
Target:  5'- -gGGGcgGcGGGCCgcuugUCCCCCGcGGCGGg -3'
miRNA:   3'- aaCCUuaC-UUUGGa----AGGGGGC-UCGCU- -5'
29647 5' -53.2 NC_006151.1 + 20621 0.68 0.897112
Target:  5'- gUGGGgugGUGggGgCgcCCCCUGGGCGGc -3'
miRNA:   3'- aACCU---UACuuUgGaaGGGGGCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 45625 0.69 0.87584
Target:  5'- -cGGAagGggGCgUggaCgCCCCGGGCGAa -3'
miRNA:   3'- aaCCUuaCuuUGgAa--G-GGGGCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 4895 0.69 0.85248
Target:  5'- -cGGAGggucGGAGCCgggccagggCuCCCCGAGCGGg -3'
miRNA:   3'- aaCCUUa---CUUUGGaa-------G-GGGGCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 33194 0.7 0.83583
Target:  5'- -gGGGAUGGccGGCCggcgCCCCCgGAGCa- -3'
miRNA:   3'- aaCCUUACU--UUGGaa--GGGGG-CUCGcu -5'
29647 5' -53.2 NC_006151.1 + 8362 0.7 0.827204
Target:  5'- -cGGAGgcgcGAGGCCcccgCCCCCGGGgGGg -3'
miRNA:   3'- aaCCUUa---CUUUGGaa--GGGGGCUCgCU- -5'
29647 5' -53.2 NC_006151.1 + 30670 0.72 0.732053
Target:  5'- cUGGuuccggGAAGCC-UCCCCCG-GCGGg -3'
miRNA:   3'- aACCuua---CUUUGGaAGGGGGCuCGCU- -5'
29647 5' -53.2 NC_006151.1 + 135782 0.72 0.732053
Target:  5'- cUGGAc-GAGGCCUUCUCacugCCGGGCGAg -3'
miRNA:   3'- aACCUuaCUUUGGAAGGG----GGCUCGCU- -5'
29647 5' -53.2 NC_006151.1 + 142704 0.72 0.732053
Target:  5'- cUGGucUGggGCCagcucUCCCCCGGGCc- -3'
miRNA:   3'- aACCuuACuuUGGa----AGGGGGCUCGcu -5'
29647 5' -53.2 NC_006151.1 + 90607 0.73 0.659348
Target:  5'- -aGGcGUGGcccCCUUCCCCCGAGgCGGc -3'
miRNA:   3'- aaCCuUACUuu-GGAAGGGGGCUC-GCU- -5'
29647 5' -53.2 NC_006151.1 + 102121 0.74 0.60651
Target:  5'- -cGGGccGGAGCCUgUUCCCCGGGCGc -3'
miRNA:   3'- aaCCUuaCUUUGGA-AGGGGGCUCGCu -5'
29647 5' -53.2 NC_006151.1 + 142787 0.76 0.503241
Target:  5'- cUGGucUGggGCCcagcucUCCCCCGAGCGc -3'
miRNA:   3'- aACCuuACuuUGGa-----AGGGGGCUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.