miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 9170 0.71 0.273702
Target:  5'- cCCCCCUCcaCCGCCCGCCCuc---GCCc -3'
miRNA:   3'- cGGGGGAG--GGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 125209 0.71 0.273702
Target:  5'- gGCCCCgCggccCCCGCggCCGCCCGucGGgcCCg -3'
miRNA:   3'- -CGGGG-Ga---GGGCG--GGCGGGCu-CCauGG- -5'
29648 3' -65.2 NC_006151.1 + 108130 0.71 0.273702
Target:  5'- aGCCCCCgUCgucccaaccggCCGCCaaGCCgCGGGGUGCUn -3'
miRNA:   3'- -CGGGGG-AG-----------GGCGGg-CGG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 140022 0.71 0.273702
Target:  5'- gGCCgaCCUgCaCCGCCUGUuuGAGGUGCg -3'
miRNA:   3'- -CGGg-GGA-G-GGCGGGCGggCUCCAUGg -5'
29648 3' -65.2 NC_006151.1 + 32323 0.71 0.273702
Target:  5'- uCCUUCUCCgCGUCCccaucuccgagGCCCGAGGcGCCg -3'
miRNA:   3'- cGGGGGAGG-GCGGG-----------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 51078 0.71 0.279786
Target:  5'- gGCCUCCUCCgcuCGCCCGCCCcucuccGCCu -3'
miRNA:   3'- -CGGGGGAGG---GCGGGCGGGcucca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 125245 0.71 0.279786
Target:  5'- cGCUCCC-CCgGCCCggcggggacGCCCGAGccGCCg -3'
miRNA:   3'- -CGGGGGaGGgCGGG---------CGGGCUCcaUGG- -5'
29648 3' -65.2 NC_006151.1 + 15340 0.71 0.285976
Target:  5'- cGUCCUCUcCCCGCCgGUCauCGAGGgcCCg -3'
miRNA:   3'- -CGGGGGA-GGGCGGgCGG--GCUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 120877 0.71 0.285976
Target:  5'- uGCUCCgCUCCgucauggccucgCGCCCGCUgGuGGUGCUg -3'
miRNA:   3'- -CGGGG-GAGG------------GCGGGCGGgCuCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 63610 0.71 0.285976
Target:  5'- gGCaCCCUCagcgcgCGCUCGCCCGAGGc-CCa -3'
miRNA:   3'- -CGgGGGAGg-----GCGGGCGGGCUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 100557 0.71 0.285976
Target:  5'- cGCCgCCCUCacggCCGgCCGCCUGcAGGccGCCa -3'
miRNA:   3'- -CGG-GGGAG----GGCgGGCGGGC-UCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 8304 0.71 0.285976
Target:  5'- cGCCgCgUCCCGCCCcgagccCCCGGGGcgcgcggGCCu -3'
miRNA:   3'- -CGGgGgAGGGCGGGc-----GGGCUCCa------UGG- -5'
29648 3' -65.2 NC_006151.1 + 1 0.7 0.292275
Target:  5'- cCCaCCC-CCCGCUC-CCCGGGG-GCCg -3'
miRNA:   3'- cGG-GGGaGGGCGGGcGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 15902 0.7 0.292275
Target:  5'- cGCgCCCCgacgcggCCCGCcgCCGCCCcguGAGGcggGCCu -3'
miRNA:   3'- -CG-GGGGa------GGGCG--GGCGGG---CUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 10611 0.7 0.292275
Target:  5'- cCUCCCUcCCCGCgCGCCCGcgugcgcucGUGCCg -3'
miRNA:   3'- cGGGGGA-GGGCGgGCGGGCuc-------CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 34113 0.7 0.30454
Target:  5'- cGCCCCUUugcaCCCGCCCcCCCaccgggcGGGGU-CCg -3'
miRNA:   3'- -CGGGGGA----GGGCGGGcGGG-------CUCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 32890 0.7 0.318551
Target:  5'- gGCCCCCUCCUG-UCGCCUGucGUuggaaugaaACCu -3'
miRNA:   3'- -CGGGGGAGGGCgGGCGGGCucCA---------UGG- -5'
29648 3' -65.2 NC_006151.1 + 36702 0.7 0.318551
Target:  5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3'
miRNA:   3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 108919 0.7 0.321274
Target:  5'- gGCCCCgCgccagaccgggggucUUCCGCCCGCggcucaacCCGAGG-GCCg -3'
miRNA:   3'- -CGGGG-G---------------AGGGCGGGCG--------GGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 37239 0.7 0.325391
Target:  5'- gGCCCCggCCCcggaGCCCGCCCGgcccccgcgcAGGaagcGCCg -3'
miRNA:   3'- -CGGGGgaGGG----CGGGCGGGC----------UCCa---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.