miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 114658 0.67 0.466412
Target:  5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3'
miRNA:   3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 76225 0.67 0.465542
Target:  5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3'
miRNA:   3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 38523 0.67 0.457752
Target:  5'- aGCUCCCcCgCCGCCgGCCCGG---ACCc -3'
miRNA:   3'- -CGGGGGaG-GGCGGgCGGGCUccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 132999 0.67 0.457752
Target:  5'- -aCUuuUCCCuUCCGCCCGgGGGUGCUc -3'
miRNA:   3'- cgGGggAGGGcGGGCGGGC-UCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 30917 0.67 0.457752
Target:  5'- cGCCCgCgggcggCCCGCgcggaUCGCCCGcgcGGUAUCg -3'
miRNA:   3'- -CGGGgGa-----GGGCG-----GGCGGGCu--CCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 21454 0.67 0.456891
Target:  5'- gGCCCCCggcggcguggUCCCGCgUCGCCgGcucgggcAGGcgGCCg -3'
miRNA:   3'- -CGGGGG----------AGGGCG-GGCGGgC-------UCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 14140 0.67 0.452598
Target:  5'- cGCgCCCCgagccgacgaggagCCgCGcCCCGCUCGAGGacGCCc -3'
miRNA:   3'- -CG-GGGGa-------------GG-GC-GGGCGGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 16894 0.67 0.449179
Target:  5'- cGCgUCCguugCCgCGCCCGCCCc-GGcGCCg -3'
miRNA:   3'- -CGgGGGa---GG-GCGGGCGGGcuCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 107885 0.67 0.449179
Target:  5'- gGCCCCCcaggCCCagccGCCCGCCgCGGccaaGCCg -3'
miRNA:   3'- -CGGGGGa---GGG----CGGGCGG-GCUcca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 59838 0.67 0.449179
Target:  5'- gGCCgCCaCCgGCCgGUCCGGGGggcgcagcUGCCg -3'
miRNA:   3'- -CGGgGGaGGgCGGgCGGGCUCC--------AUGG- -5'
29648 3' -65.2 NC_006151.1 + 104241 0.67 0.449179
Target:  5'- cGCCUUCaaCCCGCaCCuGCCCGAGaacGCCg -3'
miRNA:   3'- -CGGGGGa-GGGCG-GG-CGGGCUCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 32643 0.67 0.449179
Target:  5'- cCCCCCUCgCCGCCgGCCCcuucc-CCg -3'
miRNA:   3'- cGGGGGAG-GGCGGgCGGGcuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 114254 0.67 0.449179
Target:  5'- -aCCCCUCggaGCgCGCCCucgagGAGGUGCUc -3'
miRNA:   3'- cgGGGGAGgg-CGgGCGGG-----CUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 31912 0.67 0.440696
Target:  5'- cUCCCCUCCCGCgucCUGCgucacgggaCCGGGGgguCCc -3'
miRNA:   3'- cGGGGGAGGGCG---GGCG---------GGCUCCau-GG- -5'
29648 3' -65.2 NC_006151.1 + 62035 0.67 0.440696
Target:  5'- aGCCCCC-CgCUGCgCCGCgUGGcGGUGCa -3'
miRNA:   3'- -CGGGGGaG-GGCG-GGCGgGCU-CCAUGg -5'
29648 3' -65.2 NC_006151.1 + 5607 0.67 0.439852
Target:  5'- gGUCCCCUCCgGCggagggggcgccgCCGCCgCcGGGcGCCg -3'
miRNA:   3'- -CGGGGGAGGgCG-------------GGCGG-GcUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 82546 0.67 0.439852
Target:  5'- cGCCCCCagCCCGCCgaGCUgGAagacgaaccacgcGGaGCCg -3'
miRNA:   3'- -CGGGGGa-GGGCGGg-CGGgCU-------------CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 71430 0.67 0.432304
Target:  5'- cCCCCCUCCCGgggccaCCCGCCCccccu-CCu -3'
miRNA:   3'- cGGGGGAGGGC------GGGCGGGcuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 139595 0.67 0.432304
Target:  5'- cGCCCCC-CCgagcggcgGCCCGUCCGGGcGcgGCUg -3'
miRNA:   3'- -CGGGGGaGGg-------CGGGCGGGCUC-Ca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 117013 0.67 0.432304
Target:  5'- cGCgCUCC-CCCGCggGCCCGGgccgcaggcGGUACCa -3'
miRNA:   3'- -CG-GGGGaGGGCGggCGGGCU---------CCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.