miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 36885 0.68 0.406895
Target:  5'- cGCCCCCgcagagacagcCCCGCCggcgccgCGCCggaGAGGcGCCc -3'
miRNA:   3'- -CGGGGGa----------GGGCGG-------GCGGg--CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 39248 0.68 0.399696
Target:  5'- cGCCCCgacaUCggCCGCCucaaCGCCCagGGGGUGCUg -3'
miRNA:   3'- -CGGGGg---AG--GGCGG----GCGGG--CUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 56627 0.68 0.399696
Target:  5'- cGCCCCUgcgCaCGCCCGagauggCCGAGGccgugUACCg -3'
miRNA:   3'- -CGGGGGa--GgGCGGGCg-----GGCUCC-----AUGG- -5'
29648 3' -65.2 NC_006151.1 + 131607 0.68 0.399696
Target:  5'- cCCCCCUCCgGgCCgGCCCGcGGcuuuauacGCCc -3'
miRNA:   3'- cGGGGGAGGgC-GGgCGGGCuCCa-------UGG- -5'
29648 3' -65.2 NC_006151.1 + 61419 0.68 0.394942
Target:  5'- cGCCgUCCUCCucggccccgccgcggCGCCCGCCCGc-GUccGCCg -3'
miRNA:   3'- -CGG-GGGAGG---------------GCGGGCGGGCucCA--UGG- -5'
29648 3' -65.2 NC_006151.1 + 38022 0.68 0.391793
Target:  5'- uGCCCgCUCCggcugcccgCGCCCGCCCGc---GCCc -3'
miRNA:   3'- -CGGGgGAGG---------GCGGGCGGGCuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108223 0.68 0.391793
Target:  5'- gGCCCgCCgcaCCGCCCGCCCcucc-ACCa -3'
miRNA:   3'- -CGGG-GGag-GGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 86310 0.68 0.391793
Target:  5'- uGCCCgcagcugggggCCgugCUCGCCCGCgCCGuGGgcCCg -3'
miRNA:   3'- -CGGG-----------GGa--GGGCGGGCG-GGCuCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 107558 0.68 0.391793
Target:  5'- cGCCgCCgCCCGCCaaGCCCGcGGaGCUg -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 134406 0.68 0.389441
Target:  5'- aUCCCCUgCCCGCgCGagcuggugcugcccCCCGGGGgcGCCg -3'
miRNA:   3'- cGGGGGA-GGGCGgGC--------------GGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 101870 0.68 0.383992
Target:  5'- cGCaCCgCUCCCGCcgCCGCCgCG-GGU-CCa -3'
miRNA:   3'- -CG-GGgGAGGGCG--GGCGG-GCuCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 65904 0.68 0.383992
Target:  5'- cGCCUCCUCCCcCUCGUCCucgucGGGcGCCc -3'
miRNA:   3'- -CGGGGGAGGGcGGGCGGGc----UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 48844 0.68 0.383992
Target:  5'- gGCCCCCUCguggcgcgcgCUGCUggaGCCCGAGaucGCCa -3'
miRNA:   3'- -CGGGGGAG----------GGCGGg--CGGGCUCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 56549 0.68 0.381672
Target:  5'- gGCCCCUgcucggCCUGCcgggcgacgcgccgCCGCCCGAcgggcuGGUGCg -3'
miRNA:   3'- -CGGGGGa-----GGGCG--------------GGCGGGCU------CCAUGg -5'
29648 3' -65.2 NC_006151.1 + 37925 0.69 0.368702
Target:  5'- cGCCgCCUUCgCCGCCgcgcaGCCCGGccGcGUGCCc -3'
miRNA:   3'- -CGG-GGGAG-GGCGGg----CGGGCU--C-CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 56499 0.69 0.368702
Target:  5'- gGCCCCCcgggcCCCGCCCG-UCGuGGacGCCc -3'
miRNA:   3'- -CGGGGGa----GGGCGGGCgGGCuCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 39454 0.69 0.368702
Target:  5'- gGCCgCCCagugcgCCgugCGCUgGCCCG-GGUGCCg -3'
miRNA:   3'- -CGG-GGGa-----GG---GCGGgCGGGCuCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 107615 0.69 0.361216
Target:  5'- cGCCgCCgCCCGCCaaGCCCGuGGagacgACCc -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 12819 0.69 0.361216
Target:  5'- cGUCCCCUCuccccgCCGCCC-CCCGcGGccacACCg -3'
miRNA:   3'- -CGGGGGAG------GGCGGGcGGGCuCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 8934 0.69 0.353836
Target:  5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3'
miRNA:   3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.