miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 8934 0.69 0.353836
Target:  5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3'
miRNA:   3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 107681 0.69 0.353103
Target:  5'- gGCCCCC-CgCCGCCCacaagaaGCCCGccgccGGcACCa -3'
miRNA:   3'- -CGGGGGaG-GGCGGG-------CGGGCu----CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 68812 0.69 0.353103
Target:  5'- gGCCCgagucgaccaUCUCCCGCgCCggcguguGCUCGAGGcGCCg -3'
miRNA:   3'- -CGGG----------GGAGGGCG-GG-------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 55955 0.69 0.347285
Target:  5'- gGCaCgCCCUCCCGCggcuggugugcgaggUGCgCGAGGUGCCc -3'
miRNA:   3'- -CG-G-GGGAGGGCGg--------------GCGgGCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 32765 0.69 0.346563
Target:  5'- cGCCCCgcuCUCCCacGCCgCgGCCgCGGGGgGCCg -3'
miRNA:   3'- -CGGGG---GAGGG--CGG-G-CGG-GCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 38121 0.69 0.346563
Target:  5'- aUCCCCggggCCgGCCCGgCCGAGcGgcggcagGCCg -3'
miRNA:   3'- cGGGGGa---GGgCGGGCgGGCUC-Ca------UGG- -5'
29648 3' -65.2 NC_006151.1 + 87540 0.69 0.346563
Target:  5'- cCCCCCagCCGCCCGUCC-AGG--CCu -3'
miRNA:   3'- cGGGGGagGGCGGGCGGGcUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 24854 0.69 0.344402
Target:  5'- gGCCCaCCUucagcaccaccgugUCCGCCuCGCCCGGccGGcggGCCa -3'
miRNA:   3'- -CGGG-GGA--------------GGGCGG-GCGGGCU--CCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 28317 0.69 0.339397
Target:  5'- cGUCCCCggggCGCCCGCCCccGGGGUucgauCCc -3'
miRNA:   3'- -CGGGGGagg-GCGGGCGGG--CUCCAu----GG- -5'
29648 3' -65.2 NC_006151.1 + 25446 0.69 0.339397
Target:  5'- cUCCCCgcggCCGCCCGCCCcccccuGGcGCCa -3'
miRNA:   3'- cGGGGGag--GGCGGGCGGGcu----CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 14875 0.69 0.339397
Target:  5'- uGCCCUC-CCCGCCguucuCGCCCGucG-ACCc -3'
miRNA:   3'- -CGGGGGaGGGCGG-----GCGGGCucCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 35209 0.69 0.33234
Target:  5'- cGCCUCCgCgCGCCCauugGCCCGGGcGaGCCg -3'
miRNA:   3'- -CGGGGGaGgGCGGG----CGGGCUC-CaUGG- -5'
29648 3' -65.2 NC_006151.1 + 90613 0.69 0.33234
Target:  5'- gGCCCCCUUCC-CCCgaggcgGCCCGcGGGcGCUu -3'
miRNA:   3'- -CGGGGGAGGGcGGG------CGGGC-UCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 14811 0.69 0.33234
Target:  5'- cGCCCCCgacccaccgcgUCCGCCgCGCCCauGG-ACCg -3'
miRNA:   3'- -CGGGGGa----------GGGCGG-GCGGGcuCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 101810 0.7 0.325391
Target:  5'- cGCCCCCgucCCCGCCgucCCCGucucGGcgGCCg -3'
miRNA:   3'- -CGGGGGa--GGGCGGgc-GGGCu---CCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 37239 0.7 0.325391
Target:  5'- gGCCCCggCCCcggaGCCCGCCCGgcccccgcgcAGGaagcGCCg -3'
miRNA:   3'- -CGGGGgaGGG----CGGGCGGGC----------UCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 108919 0.7 0.321274
Target:  5'- gGCCCCgCgccagaccgggggucUUCCGCCCGCggcucaacCCGAGG-GCCg -3'
miRNA:   3'- -CGGGG-G---------------AGGGCGGGCG--------GGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 36702 0.7 0.318551
Target:  5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3'
miRNA:   3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 32890 0.7 0.318551
Target:  5'- gGCCCCCUCCUG-UCGCCUGucGUuggaaugaaACCu -3'
miRNA:   3'- -CGGGGGAGGGCgGGCGGGCucCA---------UGG- -5'
29648 3' -65.2 NC_006151.1 + 34113 0.7 0.30454
Target:  5'- cGCCCCUUugcaCCCGCCCcCCCaccgggcGGGGU-CCg -3'
miRNA:   3'- -CGGGGGA----GGGCGGGcGGG-------CUCCAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.