miRNA display CGI


Results 161 - 180 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 108319 0.71 0.250424
Target:  5'- cGCCCCCcgcgCCCggGCCCGCCCcaucgGCCa -3'
miRNA:   3'- -CGGGGGa---GGG--CGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 42567 0.71 0.248746
Target:  5'- cCCCCCUCuccggcgccacgcgCCGCCCGucCCCGAGagGCCu -3'
miRNA:   3'- cGGGGGAG--------------GGCGGGC--GGGCUCcaUGG- -5'
29648 3' -65.2 NC_006151.1 + 10547 0.72 0.244866
Target:  5'- cGCCCCgUUCCGCCCggcGCCCaauGGcgcgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCGGG---CGGGcu-CCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 2160 0.72 0.243219
Target:  5'- aGUCCCCgUCCuCGCCggggccggccccggCGCCCGAGGcccccgcggGCCg -3'
miRNA:   3'- -CGGGGG-AGG-GCGG--------------GCGGGCUCCa--------UGG- -5'
29648 3' -65.2 NC_006151.1 + 78948 0.72 0.239411
Target:  5'- cGCgCgCgCCCGCCCGCCuCGGucucGGUGCCc -3'
miRNA:   3'- -CGgGgGaGGGCGGGCGG-GCU----CCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 87300 0.72 0.239411
Target:  5'- cGCCCCC-CUCGCCCGUggcgcaCGccGUGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGGCGg-----GCucCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 137267 0.72 0.234057
Target:  5'- cGCgCCCggugCCCGCgggcaCGCUCGAGGcgGCCa -3'
miRNA:   3'- -CGgGGGa---GGGCGg----GCGGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 63339 0.72 0.234057
Target:  5'- gGCCUCCUCggCGCgCGCCCGcAGGU-CCu -3'
miRNA:   3'- -CGGGGGAGg-GCGgGCGGGC-UCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 118324 0.72 0.232471
Target:  5'- uGCCCCCgagcagcgCCgCGCCCGCCCucucgcgcgccugcGAGGcgGCg -3'
miRNA:   3'- -CGGGGGa-------GG-GCGGGCGGG--------------CUCCa-UGg -5'
29648 3' -65.2 NC_006151.1 + 12983 0.72 0.223652
Target:  5'- cCCaCCCUCCCGacucaCCCGuCCCGGGGgauuCCc -3'
miRNA:   3'- cGG-GGGAGGGC-----GGGC-GGGCUCCau--GG- -5'
29648 3' -65.2 NC_006151.1 + 34075 0.72 0.218598
Target:  5'- cGCCCCCggggUCCCG---GCCCGAGGU-CCa -3'
miRNA:   3'- -CGGGGG----AGGGCgggCGGGCUCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 108171 0.72 0.218598
Target:  5'- cCCCCCgcCCCGCCCGCCCcccc-ACCa -3'
miRNA:   3'- cGGGGGa-GGGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 15000 0.73 0.213643
Target:  5'- aGCaCCCCgaguacgggccCCCGCCCGaCCCcgagGAGGUGCg -3'
miRNA:   3'- -CG-GGGGa----------GGGCGGGC-GGG----CUCCAUGg -5'
29648 3' -65.2 NC_006151.1 + 33875 0.73 0.208784
Target:  5'- cCCCCCaUCCCGgaCCCcCCCGGGGgcggggGCCu -3'
miRNA:   3'- cGGGGG-AGGGC--GGGcGGGCUCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 64180 0.73 0.208303
Target:  5'- cGCCCCCgUCgCCGCCCGCgaucgccCCGggcAGGU-CCg -3'
miRNA:   3'- -CGGGGG-AG-GGCGGGCG-------GGC---UCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 97926 0.73 0.20402
Target:  5'- cGCCgCCgaggCCgCGCCCGCCCucgucGAGGgcgaGCCa -3'
miRNA:   3'- -CGGgGGa---GG-GCGGGCGGG-----CUCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 137652 0.73 0.20402
Target:  5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3'
miRNA:   3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5'
29648 3' -65.2 NC_006151.1 + 69510 0.73 0.199352
Target:  5'- cGCCUCCUCCgccgcCGCgCCGCgCGAGGgcGCCc -3'
miRNA:   3'- -CGGGGGAGG-----GCG-GGCGgGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 44004 0.73 0.199352
Target:  5'- aCCCCCcCCCGCagcccCCGCCCcgcGGGGaGCCg -3'
miRNA:   3'- cGGGGGaGGGCG-----GGCGGG---CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 40014 0.73 0.194776
Target:  5'- uGCCCCCUucgagaccagcgUCCGCgccgCCGCCgGGGGcGCCg -3'
miRNA:   3'- -CGGGGGA------------GGGCG----GGCGGgCUCCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.