miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 17297 0.68 0.4077
Target:  5'- gGCuCCCCgggcuucgagCCGUCCGCCgGGGGgcGCCg -3'
miRNA:   3'- -CG-GGGGag--------GGCGGGCGGgCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 18395 0.66 0.53844
Target:  5'- cGgCCCCUCguagCCGCuguccCCGCCgGGGGaggaggGCCg -3'
miRNA:   3'- -CgGGGGAG----GGCG-----GGCGGgCUCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 18530 0.66 0.535663
Target:  5'- cGUCCCCgCCCGCgucggcacccggaaCgGCCgCGAGGccGCCc -3'
miRNA:   3'- -CGGGGGaGGGCG--------------GgCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 20419 0.66 0.541222
Target:  5'- cGCCCCCUCCuCGuccuccuCCUcuucgucggagcgggGCUCGGGGguggcGCCg -3'
miRNA:   3'- -CGGGGGAGG-GC-------GGG---------------CGGGCUCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 21454 0.67 0.456891
Target:  5'- gGCCCCCggcggcguggUCCCGCgUCGCCgGcucgggcAGGcgGCCg -3'
miRNA:   3'- -CGGGGG----------AGGGCG-GGCGGgC-------UCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 23222 0.68 0.423181
Target:  5'- gGCCUCCUCCucggucaccuccuCGCCCucggggGCCuCGGGGgcaucGCCg -3'
miRNA:   3'- -CGGGGGAGG-------------GCGGG------CGG-GCUCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 24189 0.71 0.256086
Target:  5'- aGCCCCCgUCUCGggcaGCCCGAGGcgaGCCa -3'
miRNA:   3'- -CGGGGG-AGGGCggg-CGGGCUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 24854 0.69 0.344402
Target:  5'- gGCCCaCCUucagcaccaccgugUCCGCCuCGCCCGGccGGcggGCCa -3'
miRNA:   3'- -CGGG-GGA--------------GGGCGG-GCGGGCU--CCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 25446 0.69 0.339397
Target:  5'- cUCCCCgcggCCGCCCGCCCcccccuGGcGCCa -3'
miRNA:   3'- cGGGGGag--GGCGGGCGGGcu----CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 26545 0.66 0.529202
Target:  5'- uUCCCCgucCCCGCCguCGUCCGAGcccgaGCCc -3'
miRNA:   3'- cGGGGGa--GGGCGG--GCGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 27236 0.66 0.523688
Target:  5'- cGCgCaCCUCCUcggggucgggcggggGCCCGUacUCGGGGUGCUc -3'
miRNA:   3'- -CGgG-GGAGGG---------------CGGGCG--GGCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 27991 0.68 0.415804
Target:  5'- cGCCCaCUCCCGgcccacCCCGaCCGGGGgauCCc -3'
miRNA:   3'- -CGGGgGAGGGC------GGGCgGGCUCCau-GG- -5'
29648 3' -65.2 NC_006151.1 + 28210 0.66 0.492883
Target:  5'- cGCaCCCCUUuaUCGCCCcgUCGAGGggGCCg -3'
miRNA:   3'- -CG-GGGGAG--GGCGGGcgGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 28317 0.69 0.339397
Target:  5'- cGUCCCCggggCGCCCGCCCccGGGGUucgauCCc -3'
miRNA:   3'- -CGGGGGagg-GCGGGCGGG--CUCCAu----GG- -5'
29648 3' -65.2 NC_006151.1 + 29173 0.67 0.483981
Target:  5'- cUCCCUUCCCggacGCCCGCUcuCGAGGa--- -3'
miRNA:   3'- cGGGGGAGGG----CGGGCGG--GCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 30546 0.66 0.529202
Target:  5'- cCCCCCUCUCGuUCCGCgCCGcacGcGCCg -3'
miRNA:   3'- cGGGGGAGGGC-GGGCG-GGCuc-CaUGG- -5'
29648 3' -65.2 NC_006151.1 + 30729 0.67 0.483981
Target:  5'- aCCCUCUCaCGCggGCCCGGaGUGCCg -3'
miRNA:   3'- cGGGGGAGgGCGggCGGGCUcCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 30917 0.67 0.457752
Target:  5'- cGCCCgCgggcggCCCGCgcggaUCGCCCGcgcGGUAUCg -3'
miRNA:   3'- -CGGGgGa-----GGGCG-----GGCGGGCu--CCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 31225 0.71 0.255515
Target:  5'- gGCCCCCggCCgGCCgGCCCGGcgagcgagcgggcGGgcgaGCCg -3'
miRNA:   3'- -CGGGGGa-GGgCGGgCGGGCU-------------CCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 31603 0.67 0.432304
Target:  5'- cGCUCCCcCgCCGCCUGggCGGGGaUGCCg -3'
miRNA:   3'- -CGGGGGaG-GGCGGGCggGCUCC-AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.