miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 31912 0.67 0.440696
Target:  5'- cUCCCCUCCCGCgucCUGCgucacgggaCCGGGGgguCCc -3'
miRNA:   3'- cGGGGGAGGGCG---GGCG---------GGCUCCau-GG- -5'
29648 3' -65.2 NC_006151.1 + 32050 0.66 0.53844
Target:  5'- aGCCgCCUCugcagccgCCGCCCGCgCCGcg--ACCg -3'
miRNA:   3'- -CGGgGGAG--------GGCGGGCG-GGCuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 32323 0.71 0.273702
Target:  5'- uCCUUCUCCgCGUCCccaucuccgagGCCCGAGGcGCCg -3'
miRNA:   3'- cGGGGGAGG-GCGGG-----------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 32643 0.67 0.449179
Target:  5'- cCCCCCUCgCCGCCgGCCCcuucc-CCg -3'
miRNA:   3'- cGGGGGAG-GGCGGgCGGGcuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 32765 0.69 0.346563
Target:  5'- cGCCCCgcuCUCCCacGCCgCgGCCgCGGGGgGCCg -3'
miRNA:   3'- -CGGGG---GAGGG--CGG-G-CGG-GCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 32890 0.7 0.318551
Target:  5'- gGCCCCCUCCUG-UCGCCUGucGUuggaaugaaACCu -3'
miRNA:   3'- -CGGGGGAGGGCgGGCGGGCucCA---------UGG- -5'
29648 3' -65.2 NC_006151.1 + 32926 0.78 0.087862
Target:  5'- uCCCCCgaggacCCCGCucCCGCCUGuGGUGCCg -3'
miRNA:   3'- cGGGGGa-----GGGCG--GGCGGGCuCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 33770 0.71 0.261853
Target:  5'- aCCCUC-CCCGCCCGCCCcguccgACCg -3'
miRNA:   3'- cGGGGGaGGGCGGGCGGGcucca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 33875 0.73 0.208784
Target:  5'- cCCCCCaUCCCGgaCCCcCCCGGGGgcggggGCCu -3'
miRNA:   3'- cGGGGG-AGGGC--GGGcGGGCUCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 34075 0.72 0.218598
Target:  5'- cGCCCCCggggUCCCG---GCCCGAGGU-CCa -3'
miRNA:   3'- -CGGGGG----AGGGCgggCGGGCUCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 34113 0.7 0.30454
Target:  5'- cGCCCCUUugcaCCCGCCCcCCCaccgggcGGGGU-CCg -3'
miRNA:   3'- -CGGGGGA----GGGCGGGcGGG-------CUCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 34162 0.66 0.529202
Target:  5'- cCCCCCUCCCccucuGCCaCGCCCc----GCCa -3'
miRNA:   3'- cGGGGGAGGG-----CGG-GCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 34259 1.13 0.000274
Target:  5'- cGCCCCCUCCCGCCCGCCCGAGGUACCg -3'
miRNA:   3'- -CGGGGGAGGGCGGGCGGGCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 35104 0.67 0.483981
Target:  5'- -gCgCCUCgCGCCCGCgCGAGGg--- -3'
miRNA:   3'- cgGgGGAGgGCGGGCGgGCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 35209 0.69 0.33234
Target:  5'- cGCCUCCgCgCGCCCauugGCCCGGGcGaGCCg -3'
miRNA:   3'- -CGGGGGaGgGCGGG----CGGGCUC-CaUGG- -5'
29648 3' -65.2 NC_006151.1 + 35759 0.66 0.520024
Target:  5'- aGCCCUCgacggaCGCCCGacccaCCGAGGcucucgGCCc -3'
miRNA:   3'- -CGGGGGagg---GCGGGCg----GGCUCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 36652 0.68 0.4077
Target:  5'- cGCCCCCU-CCGCCgGaggggaCCGcGGUcgucACCa -3'
miRNA:   3'- -CGGGGGAgGGCGGgCg-----GGCuCCA----UGG- -5'
29648 3' -65.2 NC_006151.1 + 36702 0.7 0.318551
Target:  5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3'
miRNA:   3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 36885 0.68 0.406895
Target:  5'- cGCCCCCgcagagacagcCCCGCCggcgccgCGCCggaGAGGcGCCc -3'
miRNA:   3'- -CGGGGGa----------GGGCGG-------GCGGg--CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 37008 0.67 0.483981
Target:  5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.