miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 42225 0.66 0.493778
Target:  5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3'
miRNA:   3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5'
29648 3' -65.2 NC_006151.1 + 42567 0.71 0.248746
Target:  5'- cCCCCCUCuccggcgccacgcgCCGCCCGucCCCGAGagGCCu -3'
miRNA:   3'- cGGGGGAG--------------GGCGGGC--GGGCUCcaUGG- -5'
29648 3' -65.2 NC_006151.1 + 43190 0.68 0.4077
Target:  5'- cGCCCCCa-CCGCCUGCaCCc-GGUuCCg -3'
miRNA:   3'- -CGGGGGagGGCGGGCG-GGcuCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 43965 0.75 0.150251
Target:  5'- cGCCCCgaCCCGCCCGCCUGcucUAUCa -3'
miRNA:   3'- -CGGGGgaGGGCGGGCGGGCuccAUGG- -5'
29648 3' -65.2 NC_006151.1 + 44004 0.73 0.199352
Target:  5'- aCCCCCcCCCGCagcccCCGCCCcgcGGGGaGCCg -3'
miRNA:   3'- cGGGGGaGGGCG-----GGCGGG---CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 44105 0.67 0.466412
Target:  5'- aGCgCCCaUCCCcaucaaCCC-CCCGGGGgcgGCCa -3'
miRNA:   3'- -CGgGGG-AGGGc-----GGGcGGGCUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 44870 0.74 0.165258
Target:  5'- cGCCCUCUCUCGCCCGaCCuCGGcGGUGu- -3'
miRNA:   3'- -CGGGGGAGGGCGGGC-GG-GCU-CCAUgg -5'
29648 3' -65.2 NC_006151.1 + 45925 0.66 0.520024
Target:  5'- -aCCCUgacgagCaCCGCCUGCCCGcuGUGCa -3'
miRNA:   3'- cgGGGGa-----G-GGCGGGCGGGCucCAUGg -5'
29648 3' -65.2 NC_006151.1 + 46830 0.76 0.115174
Target:  5'- uGCCCCCgagacCgCCGCCC-CCCGGGGcggGCCu -3'
miRNA:   3'- -CGGGGGa----G-GGCGGGcGGGCUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 48218 0.68 0.424006
Target:  5'- cGCCCCCcaCCCGCgcuccCCGgCgCGAGGaGCUg -3'
miRNA:   3'- -CGGGGGa-GGGCG-----GGCgG-GCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 48554 0.74 0.161768
Target:  5'- gGCCCCCcgccgaguaagagacCCUGCggccugCCGCCCGGGGUGCg -3'
miRNA:   3'- -CGGGGGa--------------GGGCG------GGCGGGCUCCAUGg -5'
29648 3' -65.2 NC_006151.1 + 48700 0.67 0.475156
Target:  5'- gGCCcgaCCCUCcgccgCCGCCCgGCCCGcgaAGGgcacGCCc -3'
miRNA:   3'- -CGG---GGGAG-----GGCGGG-CGGGC---UCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 48778 0.75 0.153882
Target:  5'- cGCCUCCgcCCCGCCCcccgacCCCGGGGcGCCc -3'
miRNA:   3'- -CGGGGGa-GGGCGGGc-----GGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 48844 0.68 0.383992
Target:  5'- gGCCCCCUCguggcgcgcgCUGCUggaGCCCGAGaucGCCa -3'
miRNA:   3'- -CGGGGGAG----------GGCGGg--CGGGCUCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 49044 0.67 0.466412
Target:  5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3'
miRNA:   3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 49139 0.68 0.421535
Target:  5'- uGCCCgCgCCCGCCCacggcugccuggagGCCUGGGcGcGCCg -3'
miRNA:   3'- -CGGGgGaGGGCGGG--------------CGGGCUC-CaUGG- -5'
29648 3' -65.2 NC_006151.1 + 50858 0.78 0.083607
Target:  5'- gGCCgCCCUCCCGCgcccccggaccCCGuCCCGGGGccgGCCg -3'
miRNA:   3'- -CGG-GGGAGGGCG-----------GGC-GGGCUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 51078 0.71 0.279786
Target:  5'- gGCCUCCUCCgcuCGCCCGCCCcucuccGCCu -3'
miRNA:   3'- -CGGGGGAGG---GCGGGCGGGcucca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 52376 0.67 0.481325
Target:  5'- cGCCCCCggggcccgCgggggcggcgggcgCCGCCgCGCCCGAGaagucaaaGUGCUc -3'
miRNA:   3'- -CGGGGGa-------G--------------GGCGG-GCGGGCUC--------CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 55955 0.69 0.347285
Target:  5'- gGCaCgCCCUCCCGCggcuggugugcgaggUGCgCGAGGUGCCc -3'
miRNA:   3'- -CG-G-GGGAGGGCGg--------------GCGgGCUCCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.