miRNA display CGI


Results 141 - 160 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 67692 0.66 0.53844
Target:  5'- cGCgCagCUCCCGCuuGUCCGccuGGcGCCa -3'
miRNA:   3'- -CGgGg-GAGGGCGggCGGGCu--CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 68812 0.69 0.353103
Target:  5'- gGCCCgagucgaccaUCUCCCGCgCCggcguguGCUCGAGGcGCCg -3'
miRNA:   3'- -CGGG----------GGAGGGCG-GG-------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 69510 0.73 0.199352
Target:  5'- cGCCUCCUCCgccgcCGCgCCGCgCGAGGgcGCCc -3'
miRNA:   3'- -CGGGGGAGG-----GCG-GGCGgGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 71430 0.67 0.432304
Target:  5'- cCCCCCUCCCGgggccaCCCGCCCccccu-CCu -3'
miRNA:   3'- cGGGGGAGGGC------GGGCGGGcuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 74166 0.73 0.190293
Target:  5'- uGCCCaCCUCCuCGUCCGUCUcGGGcACCa -3'
miRNA:   3'- -CGGG-GGAGG-GCGGGCGGGcUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 76225 0.67 0.465542
Target:  5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3'
miRNA:   3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 78948 0.72 0.239411
Target:  5'- cGCgCgCgCCCGCCCGCCuCGGucucGGUGCCc -3'
miRNA:   3'- -CGgGgGaGGGCGGGCGG-GCU----CCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 80611 0.66 0.529202
Target:  5'- cCCCCCUCCCGUCU-CCCGucucuCCc -3'
miRNA:   3'- cGGGGGAGGGCGGGcGGGCuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 81332 0.82 0.050619
Target:  5'- cGCCCCCUCguccgucgccgCCGCCgCGCCCGGGGccCCg -3'
miRNA:   3'- -CGGGGGAG-----------GGCGG-GCGGGCUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 81686 0.68 0.424006
Target:  5'- cGCCUCggCgacggUCGCCCGCgCGAGGUccaGCCg -3'
miRNA:   3'- -CGGGGgaG-----GGCGGGCGgGCUCCA---UGG- -5'
29648 3' -65.2 NC_006151.1 + 82546 0.67 0.439852
Target:  5'- cGCCCCCagCCCGCCgaGCUgGAagacgaaccacgcGGaGCCg -3'
miRNA:   3'- -CGGGGGa-GGGCGGg-CGGgCU-------------CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 84180 0.67 0.466412
Target:  5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3'
miRNA:   3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 84531 0.73 0.1846
Target:  5'- cGCCCCCguUCCCcgugggcuucuggGCCCGCCCGGGcuucagcgaggGCCu -3'
miRNA:   3'- -CGGGGG--AGGG-------------CGGGCGGGCUCca---------UGG- -5'
29648 3' -65.2 NC_006151.1 + 86310 0.68 0.391793
Target:  5'- uGCCCgcagcugggggCCgugCUCGCCCGCgCCGuGGgcCCg -3'
miRNA:   3'- -CGGG-----------GGa--GGGCGGGCG-GGCuCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 86981 0.66 0.510909
Target:  5'- cGCCaCCgccgCUCGCCCucGCCCGAGccccgGCCc -3'
miRNA:   3'- -CGGgGGa---GGGCGGG--CGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 87300 0.72 0.239411
Target:  5'- cGCCCCC-CUCGCCCGUggcgcaCGccGUGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGGCGg-----GCucCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 87367 0.68 0.415804
Target:  5'- gGCCCCCgUCgCGCacguccCCGCCC-AGGUGgucCCg -3'
miRNA:   3'- -CGGGGG-AGgGCG------GGCGGGcUCCAU---GG- -5'
29648 3' -65.2 NC_006151.1 + 87540 0.69 0.346563
Target:  5'- cCCCCCagCCGCCCGUCC-AGG--CCu -3'
miRNA:   3'- cGGGGGagGGCGGGCGGGcUCCauGG- -5'
29648 3' -65.2 NC_006151.1 + 87688 0.79 0.071992
Target:  5'- cGCuCCCUUCCCGCCCGCcCCGAcg-ACCa -3'
miRNA:   3'- -CG-GGGGAGGGCGGGCG-GGCUccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 90613 0.69 0.33234
Target:  5'- gGCCCCCUUCC-CCCgaggcgGCCCGcGGGcGCUu -3'
miRNA:   3'- -CGGGGGAGGGcGGG------CGGGC-UCCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.