miRNA display CGI


Results 161 - 180 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 93045 0.66 0.510909
Target:  5'- cGCCuCCCcCCCGCgggccacuCCGUCCGcGGgcuCCg -3'
miRNA:   3'- -CGG-GGGaGGGCG--------GGCGGGCuCCau-GG- -5'
29648 3' -65.2 NC_006151.1 + 96375 0.67 0.432304
Target:  5'- gGCCgCCUCCaCGCgCGCgC--GGUGCCg -3'
miRNA:   3'- -CGGgGGAGG-GCGgGCGgGcuCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 97926 0.73 0.20402
Target:  5'- cGCCgCCgaggCCgCGCCCGCCCucgucGAGGgcgaGCCa -3'
miRNA:   3'- -CGGgGGa---GG-GCGGGCGGG-----CUCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 100153 0.74 0.165258
Target:  5'- cGCgCCCUCCgGCgCCGCCUgGAGGacaugGCCa -3'
miRNA:   3'- -CGgGGGAGGgCG-GGCGGG-CUCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 100557 0.71 0.285976
Target:  5'- cGCCgCCCUCacggCCGgCCGCCUGcAGGccGCCa -3'
miRNA:   3'- -CGG-GGGAG----GGCgGGCGGGC-UCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 100733 0.79 0.07568
Target:  5'- cGCCgCCCgcgCCCGCCuucaCGCCCGAGGaGCUg -3'
miRNA:   3'- -CGG-GGGa--GGGCGG----GCGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 101810 0.7 0.325391
Target:  5'- cGCCCCCgucCCCGCCgucCCCGucucGGcgGCCg -3'
miRNA:   3'- -CGGGGGa--GGGCGGgc-GGGCu---CCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 101870 0.68 0.383992
Target:  5'- cGCaCCgCUCCCGCcgCCGCCgCG-GGU-CCa -3'
miRNA:   3'- -CG-GGgGAGGGCG--GGCGG-GCuCCAuGG- -5'
29648 3' -65.2 NC_006151.1 + 101929 0.68 0.424006
Target:  5'- gGCCCCCguggCCgGCgaGCCagGAGG-ACCu -3'
miRNA:   3'- -CGGGGGa---GGgCGggCGGg-CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 104241 0.67 0.449179
Target:  5'- cGCCUUCaaCCCGCaCCuGCCCGAGaacGCCg -3'
miRNA:   3'- -CGGGGGa-GGGCG-GG-CGGGCUCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 107519 0.66 0.53844
Target:  5'- cGCCCaCgCUCCCGCCguugGCCCc-GGcgGCCc -3'
miRNA:   3'- -CGGG-G-GAGGGCGGg---CGGGcuCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 107558 0.68 0.391793
Target:  5'- cGCCgCCgCCCGCCaaGCCCGcGGaGCUg -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 107615 0.69 0.361216
Target:  5'- cGCCgCCgCCCGCCaaGCCCGuGGagacgACCc -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 107681 0.69 0.353103
Target:  5'- gGCCCCC-CgCCGCCCacaagaaGCCCGccgccGGcACCa -3'
miRNA:   3'- -CGGGGGaG-GGCGGG-------CGGGCu----CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 107815 0.66 0.539366
Target:  5'- aGCCCCCgccgccggucaucaaCCCGCCCuaCCCGGcgacggccccGGcGCCc -3'
miRNA:   3'- -CGGGGGa--------------GGGCGGGc-GGGCU----------CCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 107885 0.67 0.449179
Target:  5'- gGCCCCCcaggCCCagccGCCCGCCgCGGccaaGCCg -3'
miRNA:   3'- -CGGGGGa---GGG----CGGGCGG-GCUcca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 107972 0.68 0.4077
Target:  5'- gGCCCCC-CCUGCCCagaaGCCCccGGcgcaGCCc -3'
miRNA:   3'- -CGGGGGaGGGCGGG----CGGGcuCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 108130 0.71 0.273702
Target:  5'- aGCCCCCgUCgucccaaccggCCGCCaaGCCgCGGGGUGCUn -3'
miRNA:   3'- -CGGGGG-AG-----------GGCGGg-CGG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 108171 0.72 0.218598
Target:  5'- cCCCCCgcCCCGCCCGCCCcccc-ACCa -3'
miRNA:   3'- cGGGGGa-GGGCGGGCGGGcuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 108223 0.68 0.391793
Target:  5'- gGCCCgCCgcaCCGCCCGCCCcucc-ACCa -3'
miRNA:   3'- -CGGG-GGag-GGCGGGCGGGcuccaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.