miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 39131 0.66 0.53844
Target:  5'- gGCgCCCCgcgCCCGgccugggaCCCGCgCCGcGGcgGCCu -3'
miRNA:   3'- -CG-GGGGa--GGGC--------GGGCG-GGCuCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 38891 0.84 0.036385
Target:  5'- cGCCgCCUaCUGCCCGCCCGAGGUgGCCc -3'
miRNA:   3'- -CGGgGGAgGGCGGGCGGGCUCCA-UGG- -5'
29648 3' -65.2 NC_006151.1 + 38579 0.67 0.432304
Target:  5'- cGCgCCCggggCCCGCCgC-CCCGGGG-ACg -3'
miRNA:   3'- -CGgGGGa---GGGCGG-GcGGGCUCCaUGg -5'
29648 3' -65.2 NC_006151.1 + 38523 0.67 0.457752
Target:  5'- aGCUCCCcCgCCGCCgGCCCGG---ACCc -3'
miRNA:   3'- -CGGGGGaG-GGCGGgCGGGCUccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 38405 0.75 0.13982
Target:  5'- cGCCCCCUCCgGCCUcCCCGGcuccGGgcCCu -3'
miRNA:   3'- -CGGGGGAGGgCGGGcGGGCU----CCauGG- -5'
29648 3' -65.2 NC_006151.1 + 38330 0.69 0.353836
Target:  5'- cGCgCCCggCCUGCCCccgcucugGCCCGAGcaGCCc -3'
miRNA:   3'- -CGgGGGa-GGGCGGG--------CGGGCUCcaUGG- -5'
29648 3' -65.2 NC_006151.1 + 38165 0.73 0.1859
Target:  5'- uGUCgCCCUCgUCGCCCGCaCCGuGGcGCCg -3'
miRNA:   3'- -CGG-GGGAG-GGCGGGCG-GGCuCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 38121 0.69 0.346563
Target:  5'- aUCCCCggggCCgGCCCGgCCGAGcGgcggcagGCCg -3'
miRNA:   3'- cGGGGGa---GGgCGGGCgGGCUC-Ca------UGG- -5'
29648 3' -65.2 NC_006151.1 + 38060 0.8 0.060397
Target:  5'- cGCCCUCgggCCCGCCUGCCuCGAGGaggugacgGCCg -3'
miRNA:   3'- -CGGGGGa--GGGCGGGCGG-GCUCCa-------UGG- -5'
29648 3' -65.2 NC_006151.1 + 38022 0.68 0.391793
Target:  5'- uGCCCgCUCCggcugcccgCGCCCGCCCGc---GCCc -3'
miRNA:   3'- -CGGGgGAGG---------GCGGGCGGGCuccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 37925 0.69 0.368702
Target:  5'- cGCCgCCUUCgCCGCCgcgcaGCCCGGccGcGUGCCc -3'
miRNA:   3'- -CGG-GGGAG-GGCGGg----CGGGCU--C-CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 37467 0.66 0.501861
Target:  5'- gGCCCgCUaCCgCGCCgCGgCCGGGcccGUGCCc -3'
miRNA:   3'- -CGGGgGA-GG-GCGG-GCgGGCUC---CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 37319 0.67 0.487533
Target:  5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3'
miRNA:   3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 37239 0.7 0.325391
Target:  5'- gGCCCCggCCCcggaGCCCGCCCGgcccccgcgcAGGaagcGCCg -3'
miRNA:   3'- -CGGGGgaGGG----CGGGCGGGC----------UCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 37137 0.75 0.150251
Target:  5'- cGCCCCa-CUCGCCCGCgCCGGGccGCCa -3'
miRNA:   3'- -CGGGGgaGGGCGGGCG-GGCUCcaUGG- -5'
29648 3' -65.2 NC_006151.1 + 37008 0.67 0.483981
Target:  5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 36885 0.68 0.406895
Target:  5'- cGCCCCCgcagagacagcCCCGCCggcgccgCGCCggaGAGGcGCCc -3'
miRNA:   3'- -CGGGGGa----------GGGCGG-------GCGGg--CUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 36702 0.7 0.318551
Target:  5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3'
miRNA:   3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 36652 0.68 0.4077
Target:  5'- cGCCCCCU-CCGCCgGaggggaCCGcGGUcgucACCa -3'
miRNA:   3'- -CGGGGGAgGGCGGgCg-----GGCuCCA----UGG- -5'
29648 3' -65.2 NC_006151.1 + 35759 0.66 0.520024
Target:  5'- aGCCCUCgacggaCGCCCGacccaCCGAGGcucucgGCCc -3'
miRNA:   3'- -CGGGGGagg---GCGGGCg----GGCUCCa-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.