miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 114658 0.67 0.466412
Target:  5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3'
miRNA:   3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5'
29648 3' -65.2 NC_006151.1 + 84180 0.67 0.466412
Target:  5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3'
miRNA:   3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 59755 0.67 0.466412
Target:  5'- aGCUCCUgcagCUCGUCCucgggcacgucgGCCaCGAGGUACUu -3'
miRNA:   3'- -CGGGGGa---GGGCGGG------------CGG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 49044 0.67 0.466412
Target:  5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3'
miRNA:   3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 7019 0.67 0.466412
Target:  5'- gGCCCCCgcggcggccaUCUCgGCUCGCCCGG---GCCa -3'
miRNA:   3'- -CGGGGG----------AGGG-CGGGCGGGCUccaUGG- -5'
29648 3' -65.2 NC_006151.1 + 29173 0.67 0.483981
Target:  5'- cUCCCUUCCCggacGCCCGCUcuCGAGGa--- -3'
miRNA:   3'- cGGGGGAGGG----CGGGCGG--GCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 35104 0.67 0.483981
Target:  5'- -gCgCCUCgCGCCCGCgCGAGGg--- -3'
miRNA:   3'- cgGgGGAGgGCGGGCGgGCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 136951 0.66 0.510909
Target:  5'- gGCgCCgUCCUGCgCCGCCUGcuGGagcugGCCg -3'
miRNA:   3'- -CGgGGgAGGGCG-GGCGGGCu-CCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 93045 0.66 0.510909
Target:  5'- cGCCuCCCcCCCGCgggccacuCCGUCCGcGGgcuCCg -3'
miRNA:   3'- -CGG-GGGaGGGCG--------GGCGGGCuCCau-GG- -5'
29648 3' -65.2 NC_006151.1 + 86981 0.66 0.510909
Target:  5'- cGCCaCCgccgCUCGCCCucGCCCGAGccccgGCCc -3'
miRNA:   3'- -CGGgGGa---GGGCGGG--CGGGCUCca---UGG- -5'
29648 3' -65.2 NC_006151.1 + 112528 0.66 0.507281
Target:  5'- cGCCCUCUUCCGCgagcugaucuucgCCGCCCacgugaugcuggacGAGGaggACUc -3'
miRNA:   3'- -CGGGGGAGGGCG-------------GGCGGG--------------CUCCa--UGG- -5'
29648 3' -65.2 NC_006151.1 + 37467 0.66 0.501861
Target:  5'- gGCCCgCUaCCgCGCCgCGgCCGGGcccGUGCCc -3'
miRNA:   3'- -CGGGgGA-GG-GCGG-GCgGGCUC---CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 57453 0.66 0.501861
Target:  5'- gGCCCCCg--CGUCgGCC--AGGUGCCg -3'
miRNA:   3'- -CGGGGGaggGCGGgCGGgcUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 42225 0.66 0.493778
Target:  5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3'
miRNA:   3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5'
29648 3' -65.2 NC_006151.1 + 28210 0.66 0.492883
Target:  5'- cGCaCCCCUUuaUCGCCCcgUCGAGGggGCCg -3'
miRNA:   3'- -CG-GGGGAG--GGCGGGcgGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 37319 0.67 0.487533
Target:  5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3'
miRNA:   3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 40157 0.67 0.483981
Target:  5'- gGCCCCgCggCCCGCUCggGCCCaucaAGGUggagGCCa -3'
miRNA:   3'- -CGGGG-Ga-GGGCGGG--CGGGc---UCCA----UGG- -5'
29648 3' -65.2 NC_006151.1 + 37008 0.67 0.483981
Target:  5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 30729 0.67 0.483981
Target:  5'- aCCCUCUCaCGCggGCCCGGaGUGCCg -3'
miRNA:   3'- cGGGGGAGgGCGggCGGGCUcCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 13723 0.67 0.483981
Target:  5'- uCCCCCauuggccggUCCCggacGCCCGuCCCGcGGgccggACCg -3'
miRNA:   3'- cGGGGG---------AGGG----CGGGC-GGGCuCCa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.