miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29648 3' -65.2 NC_006151.1 + 114254 0.67 0.449179
Target:  5'- -aCCCCUCggaGCgCGCCCucgagGAGGUGCUc -3'
miRNA:   3'- cgGGGGAGgg-CGgGCGGG-----CUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 32643 0.67 0.449179
Target:  5'- cCCCCCUCgCCGCCgGCCCcuucc-CCg -3'
miRNA:   3'- cGGGGGAG-GGCGGgCGGGcuccauGG- -5'
29648 3' -65.2 NC_006151.1 + 129519 0.67 0.475156
Target:  5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3'
miRNA:   3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 135057 0.67 0.475156
Target:  5'- uCCCCCUCCuCGucuuccCCCGCCuccucgggCGGGGgcggcgggGCCg -3'
miRNA:   3'- cGGGGGAGG-GC------GGGCGG--------GCUCCa-------UGG- -5'
29648 3' -65.2 NC_006151.1 + 48700 0.67 0.475156
Target:  5'- gGCCcgaCCCUCcgccgCCGCCCgGCCCGcgaAGGgcacGCCc -3'
miRNA:   3'- -CGG---GGGAG-----GGCGGG-CGGGC---UCCa---UGG- -5'
29648 3' -65.2 NC_006151.1 + 57453 0.66 0.501861
Target:  5'- gGCCCCCg--CGUCgGCC--AGGUGCCg -3'
miRNA:   3'- -CGGGGGaggGCGGgCGGgcUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 42225 0.66 0.493778
Target:  5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3'
miRNA:   3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5'
29648 3' -65.2 NC_006151.1 + 28210 0.66 0.492883
Target:  5'- cGCaCCCCUUuaUCGCCCcgUCGAGGggGCCg -3'
miRNA:   3'- -CG-GGGGAG--GGCGGGcgGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 37319 0.67 0.487533
Target:  5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3'
miRNA:   3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5'
29648 3' -65.2 NC_006151.1 + 40157 0.67 0.483981
Target:  5'- gGCCCCgCggCCCGCUCggGCCCaucaAGGUggagGCCa -3'
miRNA:   3'- -CGGGG-Ga-GGGCGGG--CGGGc---UCCA----UGG- -5'
29648 3' -65.2 NC_006151.1 + 37008 0.67 0.483981
Target:  5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5'
29648 3' -65.2 NC_006151.1 + 30729 0.67 0.483981
Target:  5'- aCCCUCUCaCGCggGCCCGGaGUGCCg -3'
miRNA:   3'- cGGGGGAGgGCGggCGGGCUcCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 13723 0.67 0.483981
Target:  5'- uCCCCCauuggccggUCCCggacGCCCGuCCCGcGGgccggACCg -3'
miRNA:   3'- cGGGGG---------AGGG----CGGGC-GGGCuCCa----UGG- -5'
29648 3' -65.2 NC_006151.1 + 35104 0.67 0.483981
Target:  5'- -gCgCCUCgCGCCCGCgCGAGGg--- -3'
miRNA:   3'- cgGgGGAGgGCGGGCGgGCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 29173 0.67 0.483981
Target:  5'- cUCCCUUCCCggacGCCCGCUcuCGAGGa--- -3'
miRNA:   3'- cGGGGGAGGG----CGGGCGG--GCUCCaugg -5'
29648 3' -65.2 NC_006151.1 + 62451 0.67 0.483981
Target:  5'- cGCCUgCaucgCCCaCCgCGCCCGGGGcaGCCg -3'
miRNA:   3'- -CGGGgGa---GGGcGG-GCGGGCUCCa-UGG- -5'
29648 3' -65.2 NC_006151.1 + 8710 0.67 0.483095
Target:  5'- cGUCUCCgUCuCCGCCguCGCCUcgguccgaggaggGGGGUGCCc -3'
miRNA:   3'- -CGGGGG-AG-GGCGG--GCGGG-------------CUCCAUGG- -5'
29648 3' -65.2 NC_006151.1 + 63830 0.67 0.48221
Target:  5'- cGCCCUcgaagaaCUCCaCGCCCGgCCGGGcgauggaGUACa -3'
miRNA:   3'- -CGGGG-------GAGG-GCGGGCgGGCUC-------CAUGg -5'
29648 3' -65.2 NC_006151.1 + 52376 0.67 0.481325
Target:  5'- cGCCCCCggggcccgCgggggcggcgggcgCCGCCgCGCCCGAGaagucaaaGUGCUc -3'
miRNA:   3'- -CGGGGGa-------G--------------GGCGG-GCGGGCUC--------CAUGG- -5'
29648 3' -65.2 NC_006151.1 + 141781 0.67 0.478676
Target:  5'- gGUUCUgUCCCGgggacgcgggucgguCCCGCCCcGAGGgcacggGCCg -3'
miRNA:   3'- -CGGGGgAGGGC---------------GGGCGGG-CUCCa-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.