Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29648 | 5' | -56.8 | NC_006151.1 | + | 133738 | 0.66 | 0.848396 |
Target: 5'- gGCGA-GCGAGUgGGGucGGGCGcGUGCGGa -3' miRNA: 3'- -UGCUgUGCUCGgCCU--UCUGC-CACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 113026 | 0.66 | 0.856296 |
Target: 5'- gACGACGCGugcGCCGGGugcugcGCGGcgGCGGa -3' miRNA: 3'- -UGCUGUGCu--CGGCCUuc----UGCCa-CGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 81749 | 0.66 | 0.856296 |
Target: 5'- gGCGGCGCgGAGCUGGuccGCGG-GCGc -3' miRNA: 3'- -UGCUGUG-CUCGGCCuucUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 121906 | 0.66 | 0.856296 |
Target: 5'- cGCGuacGCGCGGGCCgaGGggGAcCGcGUGCu- -3' miRNA: 3'- -UGC---UGUGCUCGG--CCuuCU-GC-CACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 106191 | 0.66 | 0.856296 |
Target: 5'- cGCcGCugGAGCCGG----CGGUGCGg -3' miRNA: 3'- -UGcUGugCUCGGCCuucuGCCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 55138 | 0.66 | 0.856296 |
Target: 5'- gGCGACAUca--CGG-AGACGGUGCGc -3' miRNA: 3'- -UGCUGUGcucgGCCuUCUGCCACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 101690 | 0.66 | 0.856296 |
Target: 5'- uCGugGaCGAGCCguacguGGAgcGGGCGGUGCc- -3' miRNA: 3'- uGCugU-GCUCGG------CCU--UCUGCCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 103962 | 0.66 | 0.861705 |
Target: 5'- cGCGGCgcgccagcgcgucgGCGAGCUGGA-GGCGGccgugGCGg -3' miRNA: 3'- -UGCUG--------------UGCUCGGCCUuCUGCCa----CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 10061 | 0.66 | 0.863991 |
Target: 5'- aGCGGCuccCGAGuCCGGGaaggaaAGGCGG-GCGGa -3' miRNA: 3'- -UGCUGu--GCUC-GGCCU------UCUGCCaCGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 83020 | 0.66 | 0.863991 |
Target: 5'- cGCGGCGaGGGCCccaGGucGACGGUGgAGa -3' miRNA: 3'- -UGCUGUgCUCGG---CCuuCUGCCACgUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 64481 | 0.66 | 0.863991 |
Target: 5'- cGCGGCggggacgcccGCGGGCgCGGgcGGCGG-GCGc -3' miRNA: 3'- -UGCUG----------UGCUCG-GCCuuCUGCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 61782 | 0.66 | 0.863991 |
Target: 5'- uGCGGCGCGAgGCCGGccGGCuG-GCGu -3' miRNA: 3'- -UGCUGUGCU-CGGCCuuCUGcCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 122426 | 0.66 | 0.863991 |
Target: 5'- gACGcCGcCGAGgcCCGGGAGGCGGagGCGg -3' miRNA: 3'- -UGCuGU-GCUC--GGCCUUCUGCCa-CGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 99395 | 0.66 | 0.863991 |
Target: 5'- gACGACuACGGGcCCGGGcuGGACuacGUGCGc -3' miRNA: 3'- -UGCUG-UGCUC-GGCCU--UCUGc--CACGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 27488 | 0.66 | 0.863991 |
Target: 5'- uCGGCgggguggugggaACGGGgUGGGAGGgGGUGCGAu -3' miRNA: 3'- uGCUG------------UGCUCgGCCUUCUgCCACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 122028 | 0.66 | 0.870737 |
Target: 5'- uCGACACGuacggcgGGCgCGuGGAGACGGagcUGCAGu -3' miRNA: 3'- uGCUGUGC-------UCG-GC-CUUCUGCC---ACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 72495 | 0.66 | 0.870737 |
Target: 5'- gGCGGCGCGAGCgaaaGAAGACacugacgcgggcgGGUGCc- -3' miRNA: 3'- -UGCUGUGCUCGgc--CUUCUG-------------CCACGuu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 141867 | 0.66 | 0.871475 |
Target: 5'- cGCGcccuCugGuGCCGGAGGGcCGG-GCAu -3' miRNA: 3'- -UGCu---GugCuCGGCCUUCU-GCCaCGUu -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 56569 | 0.66 | 0.871475 |
Target: 5'- gGCGACGCGccGCCGcccGAcGGGCuGGUGCGGa -3' miRNA: 3'- -UGCUGUGCu-CGGC---CU-UCUG-CCACGUU- -5' |
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29648 | 5' | -56.8 | NC_006151.1 | + | 86726 | 0.66 | 0.871475 |
Target: 5'- cGCGGCGCGccGCCGcGAGGcCGGcgUGCGc -3' miRNA: 3'- -UGCUGUGCu-CGGC-CUUCuGCC--ACGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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