Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29649 | 3' | -55.8 | NC_006151.1 | + | 47244 | 0.72 | 0.622497 |
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Target: 5'- gCUGGUUGGCUgGCUGGCGagAUGGa- -3' miRNA: 3'- -GACUAACCGAgCGAUCGUggUGCCcc -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 82608 | 0.72 | 0.601976 |
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Target: 5'- -gGGUgGGCccgCGCgcgGGCGCCGCGGuGGg -3' miRNA: 3'- gaCUAaCCGa--GCGa--UCGUGGUGCC-CC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 45436 | 0.72 | 0.57138 |
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Target: 5'- -gGGUUcgcgGGCgUCGCacGCACCGCGGGGc -3' miRNA: 3'- gaCUAA----CCG-AGCGauCGUGGUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 127354 | 0.72 | 0.57138 |
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Target: 5'- gUGGUcGGuCUCGCccugGGCggggACCGCGGGGg -3' miRNA: 3'- gACUAaCC-GAGCGa---UCG----UGGUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 20131 | 0.74 | 0.482558 |
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Target: 5'- gCUGGggGGCg----GGCGCCGCGGGGg -3' miRNA: 3'- -GACUaaCCGagcgaUCGUGGUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 100035 | 0.74 | 0.47308 |
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Target: 5'- -cGAggcGCUCGCgcacgAGCugCACGGGGu -3' miRNA: 3'- gaCUaacCGAGCGa----UCGugGUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 43687 | 0.75 | 0.454413 |
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Target: 5'- -cGAggGGCcCGCcGGCGCgACGGGGa -3' miRNA: 3'- gaCUaaCCGaGCGaUCGUGgUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 19089 | 0.77 | 0.321992 |
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Target: 5'- -aGAUgcagGGCUCGUacacguaguacagcaGGCACCGCGGGGg -3' miRNA: 3'- gaCUAa---CCGAGCGa--------------UCGUGGUGCCCC- -5' |
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| 29649 | 3' | -55.8 | NC_006151.1 | + | 35057 | 1.11 | 0.002085 |
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Target: 5'- uCUGAUUGGCUCGCUAGCACCACGGGGg -3' miRNA: 3'- -GACUAACCGAGCGAUCGUGGUGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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