miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 89137 0.66 0.550397
Target:  5'- gGaCCGGGg--GCGUCgagacCGCGCCCGCc -3'
miRNA:   3'- aC-GGCUCguaCGCGGa----GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 131842 0.66 0.550397
Target:  5'- gUGauGAGCGggGCgGCCgagacgCGCGCCgGCGg -3'
miRNA:   3'- -ACggCUCGUa-CG-CGGa-----GCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 135101 0.66 0.550397
Target:  5'- gGCCGGGCggGCGgCgguaGCGCgCGgGg -3'
miRNA:   3'- aCGGCUCGuaCGCgGag--CGCGgGCgC- -5'
29649 5' -63.6 NC_006151.1 + 4022 0.66 0.550397
Target:  5'- gGCCGcGGCGUagguccagGCgGCCUCGCGggCGCGg -3'
miRNA:   3'- aCGGC-UCGUA--------CG-CGGAGCGCggGCGC- -5'
29649 5' -63.6 NC_006151.1 + 135863 0.66 0.550397
Target:  5'- -aCCGGGCAcGUgGCCa-GCGUCCGCGu -3'
miRNA:   3'- acGGCUCGUaCG-CGGagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117785 0.66 0.550397
Target:  5'- -uCCGGGCGggGCGCCaCGC-CCgGCGg -3'
miRNA:   3'- acGGCUCGUa-CGCGGaGCGcGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 115577 0.66 0.550397
Target:  5'- cGCgCGGGCAgGuCGCgCUCGagcaGCUCGCGc -3'
miRNA:   3'- aCG-GCUCGUaC-GCG-GAGCg---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 94255 0.66 0.550397
Target:  5'- cGCUGAGCGcgGCcacguccuugGCgUCGuCGCCCaGCGg -3'
miRNA:   3'- aCGGCUCGUa-CG----------CGgAGC-GCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 65503 0.66 0.550397
Target:  5'- cGCCG-GCGgagcGCGCCUC-C-UCCGCGg -3'
miRNA:   3'- aCGGCuCGUa---CGCGGAGcGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57073 0.66 0.550397
Target:  5'- -aCCGGGCcgGCGCCgcgcagGCGCaCGCa -3'
miRNA:   3'- acGGCUCGuaCGCGGag----CGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 38689 0.66 0.550397
Target:  5'- -cCCGGcGCAaGCGCCgcucccucggacUCGgGCCCGCu -3'
miRNA:   3'- acGGCU-CGUaCGCGG------------AGCgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 31022 0.67 0.503217
Target:  5'- cGCCGccGCG-GC-CCUCGCGgCCCGgGa -3'
miRNA:   3'- aCGGCu-CGUaCGcGGAGCGC-GGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 39454 0.67 0.503217
Target:  5'- gGCCGcccaGUGCGCCgugCGCugGCCCGgGu -3'
miRNA:   3'- aCGGCucg-UACGCGGa--GCG--CGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 50448 0.67 0.503217
Target:  5'- gGCCuGGGCAccgcccgcggGCG-CUCGCGCCagCGCGg -3'
miRNA:   3'- aCGG-CUCGUa---------CGCgGAGCGCGG--GCGC- -5'
29649 5' -63.6 NC_006151.1 + 75856 0.67 0.503217
Target:  5'- cGUCGA-CGggGCGCCccugCGUGUCCGCGu -3'
miRNA:   3'- aCGGCUcGUa-CGCGGa---GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 104550 0.67 0.503217
Target:  5'- gGCCGAGCuggcCGCCcUGgGCgCGCGg -3'
miRNA:   3'- aCGGCUCGuac-GCGGaGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 63753 0.67 0.503217
Target:  5'- cGUCG-GCGggGCGuCCUCgGCGCCCccGCGu -3'
miRNA:   3'- aCGGCuCGUa-CGC-GGAG-CGCGGG--CGC- -5'
29649 5' -63.6 NC_006151.1 + 81669 0.67 0.503217
Target:  5'- cGCacgGAGCGgcgguaCGCCUCGgcgacgguCGCCCGCGc -3'
miRNA:   3'- aCGg--CUCGUac----GCGGAGC--------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 123228 0.67 0.503217
Target:  5'- cGCCGGGUuccGCGCacggCGCGCguuCUGCGa -3'
miRNA:   3'- aCGGCUCGua-CGCGga--GCGCG---GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 138479 0.67 0.503217
Target:  5'- gGUgGGGCAaucaUGCuCCUCggcggGCGCCCGCu -3'
miRNA:   3'- aCGgCUCGU----ACGcGGAG-----CGCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.