miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 122390 0.67 0.484834
Target:  5'- cGCCGcgGGCGcGCGCUggcgGCGCUCGCc -3'
miRNA:   3'- aCGGC--UCGUaCGCGGag--CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 103321 0.67 0.484834
Target:  5'- cGCCGAGC-UGCGCacgCUgGUGCagGCGg -3'
miRNA:   3'- aCGGCUCGuACGCG---GAgCGCGggCGC- -5'
29649 5' -63.6 NC_006151.1 + 76878 0.67 0.484834
Target:  5'- cGCCagGAGCcccaGCGCCgccugcUGCGCCgGCGa -3'
miRNA:   3'- aCGG--CUCGua--CGCGGa-----GCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 75668 0.67 0.484834
Target:  5'- cGCCGAGCAgguagcGCGCCaCGuCGUCCa-- -3'
miRNA:   3'- aCGGCUCGUa-----CGCGGaGC-GCGGGcgc -5'
29649 5' -63.6 NC_006151.1 + 130486 0.67 0.484834
Target:  5'- cUGCCGcAGCGcgcgGCGCCaCaCGCCgCGCGu -3'
miRNA:   3'- -ACGGC-UCGUa---CGCGGaGcGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 90228 0.67 0.493987
Target:  5'- gGCCGAgaucGCGUcGCGgCUgGCcagcgcccaGCCCGCGg -3'
miRNA:   3'- aCGGCU----CGUA-CGCgGAgCG---------CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 92198 0.67 0.493987
Target:  5'- cGCCGAc---GCGCCgcCGCGgCCGCGc -3'
miRNA:   3'- aCGGCUcguaCGCGGa-GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 123228 0.67 0.503217
Target:  5'- cGCCGGGUuccGCGCacggCGCGCguuCUGCGa -3'
miRNA:   3'- aCGGCUCGua-CGCGga--GCGCG---GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 81669 0.67 0.503217
Target:  5'- cGCacgGAGCGgcgguaCGCCUCGgcgacgguCGCCCGCGc -3'
miRNA:   3'- aCGg--CUCGUac----GCGGAGC--------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 63753 0.67 0.503217
Target:  5'- cGUCG-GCGggGCGuCCUCgGCGCCCccGCGu -3'
miRNA:   3'- aCGGCuCGUa-CGC-GGAG-CGCGGG--CGC- -5'
29649 5' -63.6 NC_006151.1 + 104550 0.67 0.503217
Target:  5'- gGCCGAGCuggcCGCCcUGgGCgCGCGg -3'
miRNA:   3'- aCGGCUCGuac-GCGGaGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 75856 0.67 0.503217
Target:  5'- cGUCGA-CGggGCGCCccugCGUGUCCGCGu -3'
miRNA:   3'- aCGGCUcGUa-CGCGGa---GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 50448 0.67 0.503217
Target:  5'- gGCCuGGGCAccgcccgcggGCG-CUCGCGCCagCGCGg -3'
miRNA:   3'- aCGG-CUCGUa---------CGCgGAGCGCGG--GCGC- -5'
29649 5' -63.6 NC_006151.1 + 39454 0.67 0.503217
Target:  5'- gGCCGcccaGUGCGCCgugCGCugGCCCGgGu -3'
miRNA:   3'- aCGGCucg-UACGCGGa--GCG--CGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 31022 0.67 0.503217
Target:  5'- cGCCGccGCG-GC-CCUCGCGgCCCGgGa -3'
miRNA:   3'- aCGGCu-CGUaCGcGGAGCGC-GGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 138479 0.67 0.503217
Target:  5'- gGUgGGGCAaucaUGCuCCUCggcggGCGCCCGCu -3'
miRNA:   3'- aCGgCUCGU----ACGcGGAG-----CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 59284 0.67 0.503217
Target:  5'- uUGaacaCGAGCGcgGCGUg--GCGCCCGCGg -3'
miRNA:   3'- -ACg---GCUCGUa-CGCGgagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 3406 0.67 0.503217
Target:  5'- gGCCGcGGCGUGUggGUCUCGCcgGCCgggaCGCGg -3'
miRNA:   3'- aCGGC-UCGUACG--CGGAGCG--CGG----GCGC- -5'
29649 5' -63.6 NC_006151.1 + 40044 0.67 0.501365
Target:  5'- cGCCGGGg--GCGCCguggagacccacCG-GCCCGCGg -3'
miRNA:   3'- aCGGCUCguaCGCGGa-----------GCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57975 0.67 0.494906
Target:  5'- aGCCGgugGGCGgcgagcGCGCCgcggaccgccuccggCGCGgCCGCGg -3'
miRNA:   3'- aCGGC---UCGUa-----CGCGGa--------------GCGCgGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.