miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 138972 0.73 0.199286
Target:  5'- gGCCGAGCucgcgacGCGCCgcgcCGCGCucagCCGCGa -3'
miRNA:   3'- aCGGCUCGua-----CGCGGa---GCGCG----GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 35424 0.73 0.224271
Target:  5'- gGCCGGGCAUGCaaaugguCCUCGCGaggaaguucCUCGCGa -3'
miRNA:   3'- aCGGCUCGUACGc------GGAGCGC---------GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 96599 0.73 0.204081
Target:  5'- cGCCGGGCGcgggcGCGCCgacgUCGUGCCCGa- -3'
miRNA:   3'- aCGGCUCGUa----CGCGG----AGCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 85631 0.73 0.204081
Target:  5'- cGCCGcGCG-GCGCCagcggggaCGCGCCCGCc -3'
miRNA:   3'- aCGGCuCGUaCGCGGa-------GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 136937 0.73 0.21907
Target:  5'- aGCCGGGCGccgacgGCGCCguccugCGcCGCCUGCu -3'
miRNA:   3'- aCGGCUCGUa-----CGCGGa-----GC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 120882 0.73 0.199286
Target:  5'- cGCUccGuCAUG-GCCUCGCGCCCGCu -3'
miRNA:   3'- aCGGcuC-GUACgCGGAGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 128012 0.73 0.224271
Target:  5'- cGCgGGGCGgcggcgacgGCGUCUgCGaCGCCCGCGg -3'
miRNA:   3'- aCGgCUCGUa--------CGCGGA-GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 44740 0.73 0.213972
Target:  5'- aGCCGAGCAUGCGCgCgggugUUGUGUgUGCGa -3'
miRNA:   3'- aCGGCUCGUACGCG-G-----AGCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 140286 0.73 0.204081
Target:  5'- cGaCGAGCucGUGCGCCggCGcCGCCUGCGg -3'
miRNA:   3'- aCgGCUCG--UACGCGGa-GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 52749 0.73 0.224271
Target:  5'- cUGCUGcGCGcGCGCCUCGCagcgcaGCgCCGCGg -3'
miRNA:   3'- -ACGGCuCGUaCGCGGAGCG------CG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 69760 0.73 0.208976
Target:  5'- cGCCGGGgcCAcGCGCCgCGCGCgCGCGu -3'
miRNA:   3'- aCGGCUC--GUaCGCGGaGCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 30895 0.73 0.21907
Target:  5'- cGgCGAGCGgaGCGCgCgguaGCGCCCGCGg -3'
miRNA:   3'- aCgGCUCGUa-CGCG-Gag--CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 129792 0.72 0.229577
Target:  5'- cGCCG-GCGUGgGCC-CGCaugagGCCCGUGa -3'
miRNA:   3'- aCGGCuCGUACgCGGaGCG-----CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 125171 0.72 0.234989
Target:  5'- cGCgCGAGCucgaGCGCCUCGgccuCGCCgGCGu -3'
miRNA:   3'- aCG-GCUCGua--CGCGGAGC----GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 56948 0.72 0.240507
Target:  5'- cGCCGGcGCucaGCGCCUCGaGCgCGCGg -3'
miRNA:   3'- aCGGCU-CGua-CGCGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 99065 0.72 0.240507
Target:  5'- gUGCgCGAGC-UGCGCC-CGgGCaCCGUGg -3'
miRNA:   3'- -ACG-GCUCGuACGCGGaGCgCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 68834 0.72 0.234989
Target:  5'- cGCCG-GCGUGUGCUcgagGCGCCgCGCGa -3'
miRNA:   3'- aCGGCuCGUACGCGGag--CGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 122724 0.72 0.240507
Target:  5'- gGcCCGAGCAcuuugaccGCGCCcgCGCGgCCGCGa -3'
miRNA:   3'- aC-GGCUCGUa-------CGCGGa-GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 53688 0.72 0.240507
Target:  5'- cGcCCGAGC-UGCGCCUgcaCGUGguuCCCGCGg -3'
miRNA:   3'- aC-GGCUCGuACGCGGA---GCGC---GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 102359 0.72 0.234989
Target:  5'- gGCCG-GCGacgacGCGUC-CGCGCCCGUGg -3'
miRNA:   3'- aCGGCuCGUa----CGCGGaGCGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.