Results 81 - 100 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 83088 | 0.71 | 0.269732 |
Target: 5'- cGCCcacGCGUGCaCCUCgagcggGCGCCCGCGc -3' miRNA: 3'- aCGGcu-CGUACGcGGAG------CGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 10935 | 0.71 | 0.301752 |
Target: 5'- cGCCGAGgGUGgGCgCgCGUGUCCGUGu -3' miRNA: 3'- aCGGCUCgUACgCG-GaGCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 119293 | 0.71 | 0.301752 |
Target: 5'- gGaCGGGCgcGUGCugcugcacacgGCCUCGCaGCCCGCGa -3' miRNA: 3'- aCgGCUCG--UACG-----------CGGAGCG-CGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 50799 | 0.71 | 0.27219 |
Target: 5'- cUGCCGAgaccccgccagcgcaGCGUccaCGCCUCG-GCCCGCGc -3' miRNA: 3'- -ACGGCU---------------CGUAc--GCGGAGCgCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 104181 | 0.71 | 0.301752 |
Target: 5'- cGCCGAGCGcGCGCUcgGCGCCaaCGCc -3' miRNA: 3'- aCGGCUCGUaCGCGGagCGCGG--GCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 142297 | 0.71 | 0.279041 |
Target: 5'- gGCCGggacgagAGCGaGCGCCguaugggggcccgCGCGCUCGCGg -3' miRNA: 3'- aCGGC-------UCGUaCGCGGa------------GCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 130378 | 0.71 | 0.297759 |
Target: 5'- cGCCGcGGCGUccagcgcgaaggccaGCGCCU--CGCCCGCGa -3' miRNA: 3'- aCGGC-UCGUA---------------CGCGGAgcGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 99505 | 0.71 | 0.287314 |
Target: 5'- cGUgGAGCAcguggUGCGCCacugcauggcgcCGCGCCCGCc -3' miRNA: 3'- aCGgCUCGU-----ACGCGGa-----------GCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 103363 | 0.71 | 0.274045 |
Target: 5'- cGCCGAGCAgaacgaccucuacaUGCGgCUgCGCGCgCUGCu -3' miRNA: 3'- aCGGCUCGU--------------ACGCgGA-GCGCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 31716 | 0.71 | 0.27591 |
Target: 5'- cGCCGGGCGgaacgggGCGUggagagGCGCCCGCGc -3' miRNA: 3'- aCGGCUCGUa------CGCGgag---CGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 67538 | 0.71 | 0.294464 |
Target: 5'- cGCC-AGCcgGCGUCguugaccaccacgUgGCGCCCGCGg -3' miRNA: 3'- aCGGcUCGuaCGCGG-------------AgCGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 131536 | 0.71 | 0.27591 |
Target: 5'- cGCUGcucuuGCGaGCGCCUCGgGCgCCGCa -3' miRNA: 3'- aCGGCu----CGUaCGCGGAGCgCG-GGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 136988 | 0.71 | 0.269732 |
Target: 5'- cGCCGGGCGgcggGCGCg-CGCGCaCgGCGc -3' miRNA: 3'- aCGGCUCGUa---CGCGgaGCGCG-GgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 55405 | 0.71 | 0.2822 |
Target: 5'- cUGCgCGAGCAgGC-CCUgCGCGCCgCGCa -3' miRNA: 3'- -ACG-GCUCGUaCGcGGA-GCGCGG-GCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 107052 | 0.71 | 0.269732 |
Target: 5'- cGgCGAGCcgGCcuGCCUCGUGCUgGUGg -3' miRNA: 3'- aCgGCUCGuaCG--CGGAGCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 81881 | 0.71 | 0.301752 |
Target: 5'- cGCagGAGCGccgGCGCCgaggCGCGCCgguCGCGg -3' miRNA: 3'- aCGg-CUCGUa--CGCGGa---GCGCGG---GCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 104861 | 0.71 | 0.295121 |
Target: 5'- gGCCGcGGCGacggagcGCGCCaCGCGCCUGCu -3' miRNA: 3'- aCGGC-UCGUa------CGCGGaGCGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 121430 | 0.71 | 0.269732 |
Target: 5'- cGCgGGGCucgcGCcgGCCUCGCugguGCCCGCGg -3' miRNA: 3'- aCGgCUCGua--CG--CGGAGCG----CGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 77984 | 0.71 | 0.301752 |
Target: 5'- cGCCGAGCGcGCGCUgCGCGCgaCgGUGg -3' miRNA: 3'- aCGGCUCGUaCGCGGaGCGCG--GgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 134752 | 0.71 | 0.301752 |
Target: 5'- -cCCGAGCA-GCGCg-CGCgggGCCCGCGg -3' miRNA: 3'- acGGCUCGUaCGCGgaGCG---CGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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