miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 122724 0.72 0.240507
Target:  5'- gGcCCGAGCAcuuugaccGCGCCcgCGCGgCCGCGa -3'
miRNA:   3'- aC-GGCUCGUa-------CGCGGa-GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 53688 0.72 0.240507
Target:  5'- cGcCCGAGC-UGCGCCUgcaCGUGguuCCCGCGg -3'
miRNA:   3'- aC-GGCUCGuACGCGGA---GCGC---GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 56948 0.72 0.240507
Target:  5'- cGCCGGcGCucaGCGCCUCGaGCgCGCGg -3'
miRNA:   3'- aCGGCU-CGua-CGCGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 27198 0.72 0.240507
Target:  5'- gGCCGcGCAgaagGCGCCggggcccCGCGCgCCGUGg -3'
miRNA:   3'- aCGGCuCGUa---CGCGGa------GCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 5531 0.72 0.246133
Target:  5'- gGCCGAGgAUcgaGcCGCCUCGCGgCgGCGg -3'
miRNA:   3'- aCGGCUCgUA---C-GCGGAGCGCgGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 119500 0.72 0.246133
Target:  5'- cGCCGAgguccccugcucGCucugcgaccGCGCCUCGCGCcCCGCc -3'
miRNA:   3'- aCGGCU------------CGua-------CGCGGAGCGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 123072 0.72 0.246133
Target:  5'- cGCCGAGCGccggcgGCGCCUguaCGCGgaCCGCc -3'
miRNA:   3'- aCGGCUCGUa-----CGCGGA---GCGCg-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 21549 0.72 0.251868
Target:  5'- gGCCgGGGCcUGgGCCUCGgcgaGCCCGCc -3'
miRNA:   3'- aCGG-CUCGuACgCGGAGCg---CGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 38138 0.72 0.251868
Target:  5'- gGCCGAGCGgcggcaggccGCGgacucugucgcCCUCGuCGCCCGCa -3'
miRNA:   3'- aCGGCUCGUa---------CGC-----------GGAGC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 86415 0.72 0.257122
Target:  5'- cUGCCcucGGCGUcccuguccucgcgGCGCCUgGCGCCCgGCGa -3'
miRNA:   3'- -ACGGc--UCGUA-------------CGCGGAgCGCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 84578 0.72 0.257712
Target:  5'- gGCCucGaCGcGCGCCUCGCGCUgGCGc -3'
miRNA:   3'- aCGGcuC-GUaCGCGGAGCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 63900 0.72 0.257712
Target:  5'- cGCuCGAGCAgGCGCgCguacgCGCGCgCCGUGg -3'
miRNA:   3'- aCG-GCUCGUaCGCG-Ga----GCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 85339 0.72 0.263666
Target:  5'- gGCCacAGCGUGCucGCCgcgcuggCGCGCCUGCGc -3'
miRNA:   3'- aCGGc-UCGUACG--CGGa------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 84793 0.72 0.263666
Target:  5'- cGCCGAGgAgGCGCCcgaggcgacCGCGgCCGCGg -3'
miRNA:   3'- aCGGCUCgUaCGCGGa--------GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 81190 0.72 0.264268
Target:  5'- cGCCGAGCGUGUacGCCgggccgcaguccggGCGCCgGCGc -3'
miRNA:   3'- aCGGCUCGUACG--CGGag------------CGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 83088 0.71 0.269732
Target:  5'- cGCCcacGCGUGCaCCUCgagcggGCGCCCGCGc -3'
miRNA:   3'- aCGGcu-CGUACGcGGAG------CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58419 0.71 0.269732
Target:  5'- aGCUGGGCGUGCggcagccacGCCUCgguggcgugcGCGCgCGCGg -3'
miRNA:   3'- aCGGCUCGUACG---------CGGAG----------CGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 98207 0.71 0.269732
Target:  5'- cGCgGGGUcgaGUGCGCggCgGCGCCCGCGc -3'
miRNA:   3'- aCGgCUCG---UACGCGgaG-CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 121430 0.71 0.269732
Target:  5'- cGCgGGGCucgcGCcgGCCUCGCugguGCCCGCGg -3'
miRNA:   3'- aCGgCUCGua--CG--CGGAGCG----CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 107052 0.71 0.269732
Target:  5'- cGgCGAGCcgGCcuGCCUCGUGCUgGUGg -3'
miRNA:   3'- aCgGCUCGuaCG--CGGAGCGCGGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.