miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 136988 0.71 0.269732
Target:  5'- cGCCGGGCGgcggGCGCg-CGCGCaCgGCGc -3'
miRNA:   3'- aCGGCUCGUa---CGCGgaGCGCG-GgCGC- -5'
29649 5' -63.6 NC_006151.1 + 50799 0.71 0.27219
Target:  5'- cUGCCGAgaccccgccagcgcaGCGUccaCGCCUCG-GCCCGCGc -3'
miRNA:   3'- -ACGGCU---------------CGUAc--GCGGAGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 103363 0.71 0.274045
Target:  5'- cGCCGAGCAgaacgaccucuacaUGCGgCUgCGCGCgCUGCu -3'
miRNA:   3'- aCGGCUCGU--------------ACGCgGA-GCGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 10625 0.71 0.27591
Target:  5'- cGCCc-GCGUGCG-CUCGUGCCgGCGc -3'
miRNA:   3'- aCGGcuCGUACGCgGAGCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 31716 0.71 0.27591
Target:  5'- cGCCGGGCGgaacgggGCGUggagagGCGCCCGCGc -3'
miRNA:   3'- aCGGCUCGUa------CGCGgag---CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 131536 0.71 0.27591
Target:  5'- cGCUGcucuuGCGaGCGCCUCGgGCgCCGCa -3'
miRNA:   3'- aCGGCu----CGUaCGCGGAGCgCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 106758 0.71 0.27591
Target:  5'- cGCCGAGCA-GCGCgaCGCGCgugaGCGc -3'
miRNA:   3'- aCGGCUCGUaCGCGgaGCGCGgg--CGC- -5'
29649 5' -63.6 NC_006151.1 + 142297 0.71 0.279041
Target:  5'- gGCCGggacgagAGCGaGCGCCguaugggggcccgCGCGCUCGCGg -3'
miRNA:   3'- aCGGC-------UCGUaCGCGGa------------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 55405 0.71 0.2822
Target:  5'- cUGCgCGAGCAgGC-CCUgCGCGCCgCGCa -3'
miRNA:   3'- -ACG-GCUCGUaCGcGGA-GCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 99505 0.71 0.287314
Target:  5'- cGUgGAGCAcguggUGCGCCacugcauggcgcCGCGCCCGCc -3'
miRNA:   3'- aCGgCUCGU-----ACGCGGa-----------GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 82113 0.71 0.287958
Target:  5'- aGCCGAGCGUGUacacguggaagcgGCCcgcgggCGgGCCCgGCGg -3'
miRNA:   3'- aCGGCUCGUACG-------------CGGa-----GCgCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 67494 0.71 0.288604
Target:  5'- cGCacaCGAGCGcGCGgCUCGCGUCCGgGu -3'
miRNA:   3'- aCG---GCUCGUaCGCgGAGCGCGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 113543 0.71 0.288604
Target:  5'- cGCUGAuGC--GCGCCgCGgGCCCGCGc -3'
miRNA:   3'- aCGGCU-CGuaCGCGGaGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 88912 0.71 0.288604
Target:  5'- cGUCGGGCGaGCGgaa-GCGCCCGCGg -3'
miRNA:   3'- aCGGCUCGUaCGCggagCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 50619 0.71 0.288604
Target:  5'- cGCCGcggcAGCGUGCacGCCUCGgcgaCGgCCGCGg -3'
miRNA:   3'- aCGGC----UCGUACG--CGGAGC----GCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 89025 0.71 0.288604
Target:  5'- aGCCGcucccGGCAcacgaUGCGCUU-GCGCCCGUGc -3'
miRNA:   3'- aCGGC-----UCGU-----ACGCGGAgCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 62440 0.71 0.288604
Target:  5'- cGCCuGGUccGCGCCUgcaucgcccacCGCGCCCGgGg -3'
miRNA:   3'- aCGGcUCGuaCGCGGA-----------GCGCGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 36109 0.71 0.288604
Target:  5'- gGCCGAgGCcgcCGuCCUCGCGgCCGCGg -3'
miRNA:   3'- aCGGCU-CGuacGC-GGAGCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 34243 0.71 0.288604
Target:  5'- gGCCGAGCcggucucGCGCCcccUCcCGCCCGCc -3'
miRNA:   3'- aCGGCUCGua-----CGCGG---AGcGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 67538 0.71 0.294464
Target:  5'- cGCC-AGCcgGCGUCguugaccaccacgUgGCGCCCGCGg -3'
miRNA:   3'- aCGGcUCGuaCGCGG-------------AgCGCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.