miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 105911 0.71 0.295121
Target:  5'- aUGCUGuGCAccgacgaggGCGCCgagcUGCGCCCGCc -3'
miRNA:   3'- -ACGGCuCGUa--------CGCGGa---GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 104861 0.71 0.295121
Target:  5'- gGCCGcGGCGacggagcGCGCCaCGCGCCUGCu -3'
miRNA:   3'- aCGGC-UCGUa------CGCGGaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 130378 0.71 0.297759
Target:  5'- cGCCGcGGCGUccagcgcgaaggccaGCGCCU--CGCCCGCGa -3'
miRNA:   3'- aCGGC-UCGUA---------------CGCGGAgcGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 10935 0.71 0.301752
Target:  5'- cGCCGAGgGUGgGCgCgCGUGUCCGUGu -3'
miRNA:   3'- aCGGCUCgUACgCG-GaGCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 77984 0.71 0.301752
Target:  5'- cGCCGAGCGcGCGCUgCGCGCgaCgGUGg -3'
miRNA:   3'- aCGGCUCGUaCGCGGaGCGCG--GgCGC- -5'
29649 5' -63.6 NC_006151.1 + 134752 0.71 0.301752
Target:  5'- -cCCGAGCA-GCGCg-CGCgggGCCCGCGg -3'
miRNA:   3'- acGGCUCGUaCGCGgaGCG---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 119293 0.71 0.301752
Target:  5'- gGaCGGGCgcGUGCugcugcacacgGCCUCGCaGCCCGCGa -3'
miRNA:   3'- aCgGCUCG--UACG-----------CGGAGCG-CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 104181 0.71 0.301752
Target:  5'- cGCCGAGCGcGCGCUcgGCGCCaaCGCc -3'
miRNA:   3'- aCGGCUCGUaCGCGGagCGCGG--GCGc -5'
29649 5' -63.6 NC_006151.1 + 81881 0.71 0.301752
Target:  5'- cGCagGAGCGccgGCGCCgaggCGCGCCgguCGCGg -3'
miRNA:   3'- aCGg-CUCGUa--CGCGGa---GCGCGG---GCGC- -5'
29649 5' -63.6 NC_006151.1 + 91251 0.7 0.307139
Target:  5'- aGCCGGGCcccgucgcgagGaCGCC-CGCGUCCGCa -3'
miRNA:   3'- aCGGCUCGua---------C-GCGGaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 89701 0.7 0.307817
Target:  5'- cGCCGcguccaggaacccGGCG-GCGCCggcCGCGgCCGCGg -3'
miRNA:   3'- aCGGC-------------UCGUaCGCGGa--GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 87322 0.7 0.308497
Target:  5'- cGCCGuGCcgGCGCUccCGgGCCUGCc -3'
miRNA:   3'- aCGGCuCGuaCGCGGa-GCgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 13421 0.7 0.308497
Target:  5'- aGCCGGGCccGCGUCcccgGgGCCCGCa -3'
miRNA:   3'- aCGGCUCGuaCGCGGag--CgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 134317 0.7 0.315357
Target:  5'- cGCCGc---UGCGCCUCGCGCCgGgCa -3'
miRNA:   3'- aCGGCucguACGCGGAGCGCGGgC-Gc -5'
29649 5' -63.6 NC_006151.1 + 137408 0.7 0.315357
Target:  5'- cGCCGGGgG-GCGcCCUCGCcGCcgCCGCGg -3'
miRNA:   3'- aCGGCUCgUaCGC-GGAGCG-CG--GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 82509 0.7 0.315357
Target:  5'- gGCCGAGCAgGUGCC-CGCGgaUgCGCGu -3'
miRNA:   3'- aCGGCUCGUaCGCGGaGCGC--GgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 77222 0.7 0.315357
Target:  5'- cGCCGcguGUGUGCGCCgggagGCGCCCcccgGCGg -3'
miRNA:   3'- aCGGCu--CGUACGCGGag---CGCGGG----CGC- -5'
29649 5' -63.6 NC_006151.1 + 10677 0.7 0.318133
Target:  5'- cGCgGAGCGcGcCGCCcccccgugaucacguUCGCGCaCCGCGg -3'
miRNA:   3'- aCGgCUCGUaC-GCGG---------------AGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 64634 0.7 0.322331
Target:  5'- cGCgGGGCGcgGCGCCcCGCGCaggaaCCGCa -3'
miRNA:   3'- aCGgCUCGUa-CGCGGaGCGCG-----GGCGc -5'
29649 5' -63.6 NC_006151.1 + 39583 0.7 0.322331
Target:  5'- gGCCGAGCcgcUGCGCCUCuGCcGCCaggacaacgUGCGc -3'
miRNA:   3'- aCGGCUCGu--ACGCGGAG-CG-CGG---------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.