Results 81 - 100 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29649 | 5' | -63.6 | NC_006151.1 | + | 63753 | 0.67 | 0.503217 |
Target: 5'- cGUCG-GCGggGCGuCCUCgGCGCCCccGCGu -3' miRNA: 3'- aCGGCuCGUa-CGC-GGAG-CGCGGG--CGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 81669 | 0.67 | 0.503217 |
Target: 5'- cGCacgGAGCGgcgguaCGCCUCGgcgacgguCGCCCGCGc -3' miRNA: 3'- aCGg--CUCGUac----GCGGAGC--------GCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 123228 | 0.67 | 0.503217 |
Target: 5'- cGCCGGGUuccGCGCacggCGCGCguuCUGCGa -3' miRNA: 3'- aCGGCUCGua-CGCGga--GCGCG---GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 40044 | 0.67 | 0.501365 |
Target: 5'- cGCCGGGg--GCGCCguggagacccacCG-GCCCGCGg -3' miRNA: 3'- aCGGCUCguaCGCGGa-----------GCgCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 57975 | 0.67 | 0.494906 |
Target: 5'- aGCCGgugGGCGgcgagcGCGCCgcggaccgccuccggCGCGgCCGCGg -3' miRNA: 3'- aCGGC---UCGUa-----CGCGGa--------------GCGCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 37937 | 0.67 | 0.493987 |
Target: 5'- cGCCGcGCA-GCccgGCCgCGUGCcCCGCGa -3' miRNA: 3'- aCGGCuCGUaCG---CGGaGCGCG-GGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 49249 | 0.67 | 0.493987 |
Target: 5'- gGCUGGGC--GCGgCUCGUGCgCGCc -3' miRNA: 3'- aCGGCUCGuaCGCgGAGCGCGgGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 52034 | 0.67 | 0.493987 |
Target: 5'- cGgCGAagGCcgGCGCCgUCGCGUgCGUGu -3' miRNA: 3'- aCgGCU--CGuaCGCGG-AGCGCGgGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 68895 | 0.67 | 0.493987 |
Target: 5'- cGUCGAGgAcG-GCCUCGCGgUCGCGc -3' miRNA: 3'- aCGGCUCgUaCgCGGAGCGCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 87282 | 0.67 | 0.493987 |
Target: 5'- aGCCGGggcuGCAcGCGCCgcccccCuCGCCCGUGg -3' miRNA: 3'- aCGGCU----CGUaCGCGGa-----GcGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 90228 | 0.67 | 0.493987 |
Target: 5'- gGCCGAgaucGCGUcGCGgCUgGCcagcgcccaGCCCGCGg -3' miRNA: 3'- aCGGCU----CGUA-CGCgGAgCG---------CGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 92198 | 0.67 | 0.493987 |
Target: 5'- cGCCGAc---GCGCCgcCGCGgCCGCGc -3' miRNA: 3'- aCGGCUcguaCGCGGa-GCGCgGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 139134 | 0.67 | 0.493068 |
Target: 5'- cGCCc--CGUGCGcCCUCGUcuucccgcuguacGCCCGCGc -3' miRNA: 3'- aCGGcucGUACGC-GGAGCG-------------CGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 127402 | 0.67 | 0.491233 |
Target: 5'- gGCCGAgucgacgggagcccGCGggGuCGCCUCgGCGCUCGUGc -3' miRNA: 3'- aCGGCU--------------CGUa-C-GCGGAG-CGCGGGCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 75668 | 0.67 | 0.484834 |
Target: 5'- cGCCGAGCAgguagcGCGCCaCGuCGUCCa-- -3' miRNA: 3'- aCGGCUCGUa-----CGCGGaGC-GCGGGcgc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 76878 | 0.67 | 0.484834 |
Target: 5'- cGCCagGAGCcccaGCGCCgccugcUGCGCCgGCGa -3' miRNA: 3'- aCGG--CUCGua--CGCGGa-----GCGCGGgCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 103321 | 0.67 | 0.484834 |
Target: 5'- cGCCGAGC-UGCGCacgCUgGUGCagGCGg -3' miRNA: 3'- aCGGCUCGuACGCG---GAgCGCGggCGC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 122390 | 0.67 | 0.484834 |
Target: 5'- cGCCGcgGGCGcGCGCUggcgGCGCUCGCc -3' miRNA: 3'- aCGGC--UCGUaCGCGGag--CGCGGGCGc -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 127566 | 0.67 | 0.484834 |
Target: 5'- gGCCGccGCcgGCGCCUCGUucgccgucCCCGuCGg -3' miRNA: 3'- aCGGCu-CGuaCGCGGAGCGc-------GGGC-GC- -5' |
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29649 | 5' | -63.6 | NC_006151.1 | + | 130486 | 0.67 | 0.484834 |
Target: 5'- cUGCCGcAGCGcgcgGCGCCaCaCGCCgCGCGu -3' miRNA: 3'- -ACGGC-UCGUa---CGCGGaGcGCGG-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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