miRNA display CGI


Results 61 - 80 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 37991 0.68 0.423236
Target:  5'- cUGCCGcGGCGUccucgaGCGCCUgcUGCccuGCCCGCu -3'
miRNA:   3'- -ACGGC-UCGUA------CGCGGA--GCG---CGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 38138 0.72 0.251868
Target:  5'- gGCCGAGCGgcggcaggccGCGgacucugucgcCCUCGuCGCCCGCa -3'
miRNA:   3'- aCGGCUCGUa---------CGC-----------GGAGC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 38191 0.72 0.229577
Target:  5'- cGCCGcuggugcgcuacAGCGUGgacgggGCC-CGCGCCCGCGa -3'
miRNA:   3'- aCGGC------------UCGUACg-----CGGaGCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 38294 0.69 0.382222
Target:  5'- cGCCGAGgccgcCGcGCgGCC-CGgGCCCGCGg -3'
miRNA:   3'- aCGGCUC-----GUaCG-CGGaGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 38353 0.67 0.50693
Target:  5'- gGcCCGAGCA-GCccgGCCUCgucgucccagcgccgGCGCCgGCGg -3'
miRNA:   3'- aC-GGCUCGUaCG---CGGAG---------------CGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 38551 0.74 0.184597
Target:  5'- cGcCCGAGCGgcgcaagaagaaGCGCCgCGCGCCCGgGg -3'
miRNA:   3'- aC-GGCUCGUa-----------CGCGGaGCGCGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 38689 0.66 0.550397
Target:  5'- -cCCGGcGCAaGCGCCgcucccucggacUCGgGCCCGCu -3'
miRNA:   3'- acGGCU-CGUaCGCGG------------AGCgCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 39115 0.77 0.105153
Target:  5'- cGCCGAGCccgccgaggGCGCCcCGCGCCCGg- -3'
miRNA:   3'- aCGGCUCGua-------CGCGGaGCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 39454 0.67 0.503217
Target:  5'- gGCCGcccaGUGCGCCgugCGCugGCCCGgGu -3'
miRNA:   3'- aCGGCucg-UACGCGGa--GCG--CGGGCgC- -5'
29649 5' -63.6 NC_006151.1 + 39583 0.7 0.322331
Target:  5'- gGCCGAGCcgcUGCGCCUCuGCcGCCaggacaacgUGCGc -3'
miRNA:   3'- aCGGCUCGu--ACGCGGAG-CG-CGG---------GCGC- -5'
29649 5' -63.6 NC_006151.1 + 39848 0.66 0.521897
Target:  5'- gGCC--GCcgGgGCCUCGCcgaGCuCCGCGg -3'
miRNA:   3'- aCGGcuCGuaCgCGGAGCG---CG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 39892 0.74 0.19459
Target:  5'- gGCCGAGUugcGCGCCUucUGCGC-CGCGg -3'
miRNA:   3'- aCGGCUCGua-CGCGGA--GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 40044 0.67 0.501365
Target:  5'- cGCCGGGg--GCGCCguggagacccacCG-GCCCGCGg -3'
miRNA:   3'- aCGGCUCguaCGCGGa-----------GCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 40246 0.69 0.351372
Target:  5'- cGCUGAGCGggGCGCCcccUCG-GCCCGg- -3'
miRNA:   3'- aCGGCUCGUa-CGCGG---AGCgCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 41509 0.69 0.381429
Target:  5'- aGCCaaugGGGCggGCGCCgCGgagcggaagccccCGCCCGCGg -3'
miRNA:   3'- aCGG----CUCGuaCGCGGaGC-------------GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 44740 0.73 0.213972
Target:  5'- aGCCGAGCAUGCGCgCgggugUUGUGUgUGCGa -3'
miRNA:   3'- aCGGCUCGUACGCG-G-----AGCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 46138 0.76 0.141874
Target:  5'- -uCCGGGUcUGgGUCUCGCGCCCGCc -3'
miRNA:   3'- acGGCUCGuACgCGGAGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 47909 0.66 0.512522
Target:  5'- cGCCucG-AUGCGCCccaUCGCGCCC-CGu -3'
miRNA:   3'- aCGGcuCgUACGCGG---AGCGCGGGcGC- -5'
29649 5' -63.6 NC_006151.1 + 48584 0.75 0.15274
Target:  5'- cUGCCGcccGGgGUGCGCCUCGUcguGCCUGCc -3'
miRNA:   3'- -ACGGC---UCgUACGCGGAGCG---CGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 48966 0.66 0.569661
Target:  5'- cGCCuGGac-GCGCCUCacgGCGCCCGa- -3'
miRNA:   3'- aCGGcUCguaCGCGGAG---CGCGGGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.