miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 49116 0.66 0.540839
Target:  5'- gGuCCGGGCGacguacccgacGCuGCC-CGCGCCCGCc -3'
miRNA:   3'- aC-GGCUCGUa----------CG-CGGaGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 49249 0.67 0.493987
Target:  5'- gGCUGGGC--GCGgCUCGUGCgCGCc -3'
miRNA:   3'- aCGGCUCGuaCGCgGAGCGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 49497 0.69 0.366573
Target:  5'- aGUCGGGCGUGCGCgCacacCGCCgGCGg -3'
miRNA:   3'- aCGGCUCGUACGCG-Gagc-GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 50420 0.68 0.431751
Target:  5'- cGaCGAGgAgGCGCCccugCGCGCCgGCGg -3'
miRNA:   3'- aCgGCUCgUaCGCGGa---GCGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 50448 0.67 0.503217
Target:  5'- gGCCuGGGCAccgcccgcggGCG-CUCGCGCCagCGCGg -3'
miRNA:   3'- aCGG-CUCGUa---------CGCgGAGCGCGG--GCGC- -5'
29649 5' -63.6 NC_006151.1 + 50619 0.71 0.288604
Target:  5'- cGCCGcggcAGCGUGCacGCCUCGgcgaCGgCCGCGg -3'
miRNA:   3'- aCGGC----UCGUACG--CGGAGC----GCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 50799 0.71 0.27219
Target:  5'- cUGCCGAgaccccgccagcgcaGCGUccaCGCCUCG-GCCCGCGc -3'
miRNA:   3'- -ACGGCU---------------CGUAc--GCGGAGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 51207 0.69 0.358916
Target:  5'- gGCC-AGCAgGcCGCCcgCGgGCCCGCGc -3'
miRNA:   3'- aCGGcUCGUaC-GCGGa-GCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 52000 0.69 0.351372
Target:  5'- gUGCCG-GCGUGCaGCUU-GCGCCgCGCc -3'
miRNA:   3'- -ACGGCuCGUACG-CGGAgCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 52034 0.67 0.493987
Target:  5'- cGgCGAagGCcgGCGCCgUCGCGUgCGUGu -3'
miRNA:   3'- aCgGCU--CGuaCGCGG-AGCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 52385 0.69 0.358916
Target:  5'- gGCCcgcggGGGCGgcggGCGCCgcCGCGCCCGa- -3'
miRNA:   3'- aCGG-----CUCGUa---CGCGGa-GCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 52749 0.73 0.224271
Target:  5'- cUGCUGcGCGcGCGCCUCGCagcgcaGCgCCGCGg -3'
miRNA:   3'- -ACGGCuCGUaCGCGGAGCG------CG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 53335 0.68 0.414823
Target:  5'- aGaCGAGCAcgggGCGCg-CGCGCgCCGCGu -3'
miRNA:   3'- aCgGCUCGUa---CGCGgaGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 53688 0.72 0.240507
Target:  5'- cGcCCGAGC-UGCGCCUgcaCGUGguuCCCGCGg -3'
miRNA:   3'- aC-GGCUCGuACGCGGA---GCGC---GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 54415 0.7 0.336623
Target:  5'- cGCCGAgGCGcuggcgcgGCGCUUCggcgacgagGCGCCCGCc -3'
miRNA:   3'- aCGGCU-CGUa-------CGCGGAG---------CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 54598 0.69 0.390211
Target:  5'- gUGCCucGGCguggucccgGUGCGCCgggCGCGCCC-CGg -3'
miRNA:   3'- -ACGGc-UCG---------UACGCGGa--GCGCGGGcGC- -5'
29649 5' -63.6 NC_006151.1 + 54679 0.69 0.366573
Target:  5'- gGCCGGGCAccUGCGCgUCGCcggcaGCgUGCu -3'
miRNA:   3'- aCGGCUCGU--ACGCGgAGCG-----CGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 54952 0.66 0.531337
Target:  5'- cUGCgCGAGCAcgcGCGCCUC-UGCCaGCu -3'
miRNA:   3'- -ACG-GCUCGUa--CGCGGAGcGCGGgCGc -5'
29649 5' -63.6 NC_006151.1 + 55083 0.66 0.531337
Target:  5'- gGCCGcGGC--GCGCCUCGUGCgccucaUCGUGa -3'
miRNA:   3'- aCGGC-UCGuaCGCGGAGCGCG------GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 55214 0.67 0.479382
Target:  5'- aGCCGGGCuucgggcaccacgGCGCCggcgCGCaGCCgGUGc -3'
miRNA:   3'- aCGGCUCGua-----------CGCGGa---GCG-CGGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.