miRNA display CGI


Results 101 - 120 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 55405 0.71 0.2822
Target:  5'- cUGCgCGAGCAgGC-CCUgCGCGCCgCGCa -3'
miRNA:   3'- -ACG-GCUCGUaCGcGGA-GCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 55467 0.68 0.449076
Target:  5'- cGCCGgggGGCGcGCGCC-CG-GCgCCGCGg -3'
miRNA:   3'- aCGGC---UCGUaCGCGGaGCgCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 56057 0.66 0.544656
Target:  5'- cGCUGAcGC-UGCGCCUCgagagcggcgagacgGUGuCCUGCGa -3'
miRNA:   3'- aCGGCU-CGuACGCGGAG---------------CGC-GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 56319 0.68 0.440365
Target:  5'- gUGCCuGAGCcUGgGCCgguggcuggagCGCGCgCGCGc -3'
miRNA:   3'- -ACGG-CUCGuACgCGGa----------GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 56383 0.66 0.521897
Target:  5'- cUGCUGcacGUcgGCGCCaCGCGCgCGCu -3'
miRNA:   3'- -ACGGCu--CGuaCGCGGaGCGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 56563 0.73 0.224271
Target:  5'- cUGCCGGGCGacGCGCCgC-CGCCCGaCGg -3'
miRNA:   3'- -ACGGCUCGUa-CGCGGaGcGCGGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 56948 0.72 0.240507
Target:  5'- cGCCGGcGCucaGCGCCUCGaGCgCGCGg -3'
miRNA:   3'- aCGGCU-CGua-CGCGGAGCgCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57073 0.66 0.550397
Target:  5'- -aCCGGGCcgGCGCCgcgcagGCGCaCGCa -3'
miRNA:   3'- acGGCUCGuaCGCGGag----CGCGgGCGc -5'
29649 5' -63.6 NC_006151.1 + 57103 0.76 0.141874
Target:  5'- cGCCgcGAGCAgcgcGCGCCgcCGCGCCCgGCGg -3'
miRNA:   3'- aCGG--CUCGUa---CGCGGa-GCGCGGG-CGC- -5'
29649 5' -63.6 NC_006151.1 + 57227 0.69 0.381429
Target:  5'- gGCCGucGCAggcgGCgcgcgcgGCCUCgGCGUCCGCGc -3'
miRNA:   3'- aCGGCu-CGUa---CG-------CGGAG-CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57341 0.67 0.484834
Target:  5'- aGCCGAcaaaguccGCGggGC-CCUCGCGCcgCCGCa -3'
miRNA:   3'- aCGGCU--------CGUa-CGcGGAGCGCG--GGCGc -5'
29649 5' -63.6 NC_006151.1 + 57513 0.68 0.414823
Target:  5'- gGCCGcGGCGgcgGCgGCCgccuccggCGCGgCCGCGg -3'
miRNA:   3'- aCGGC-UCGUa--CG-CGGa-------GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57701 0.7 0.335174
Target:  5'- cGCCGAagaagGCcacgaGCGCCggcuugaccgcgCGCGCCCGCa -3'
miRNA:   3'- aCGGCU-----CGua---CGCGGa-----------GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 57946 0.67 0.466778
Target:  5'- aGCCGAGCGcGgGCCacagCcCGUCCGUGa -3'
miRNA:   3'- aCGGCUCGUaCgCGGa---GcGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 57975 0.67 0.494906
Target:  5'- aGCCGgugGGCGgcgagcGCGCCgcggaccgccuccggCGCGgCCGCGg -3'
miRNA:   3'- aCGGC---UCGUa-----CGCGGa--------------GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58127 0.66 0.560006
Target:  5'- gGUCGcgucGCccGCGCCguaCGCGgCCGCGu -3'
miRNA:   3'- aCGGCu---CGuaCGCGGa--GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58231 0.7 0.336623
Target:  5'- gGaCGAGCAcgcGCGCCgccacgCGCcgGCCCGCGg -3'
miRNA:   3'- aCgGCUCGUa--CGCGGa-----GCG--CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58419 0.71 0.269732
Target:  5'- aGCUGGGCGUGCggcagccacGCCUCgguggcgugcGCGCgCGCGg -3'
miRNA:   3'- aCGGCUCGUACG---------CGGAG----------CGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 58673 0.66 0.550397
Target:  5'- gGCCGc-CAUgaccGCGCCgugCGCGCCgCGCc -3'
miRNA:   3'- aCGGCucGUA----CGCGGa--GCGCGG-GCGc -5'
29649 5' -63.6 NC_006151.1 + 58709 0.68 0.443838
Target:  5'- cGCCGGGUccgccaGCGCCcccgugccgcucgcgUCGCGCagcgCCGCGg -3'
miRNA:   3'- aCGGCUCGua----CGCGG---------------AGCGCG----GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.