miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 130523 0.66 0.540839
Target:  5'- gGCgCGGGCGUcGCGUacaCGCcCCCGCGc -3'
miRNA:   3'- aCG-GCUCGUA-CGCGga-GCGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 130486 0.67 0.484834
Target:  5'- cUGCCGcAGCGcgcgGCGCCaCaCGCCgCGCGu -3'
miRNA:   3'- -ACGGC-UCGUa---CGCGGaGcGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 130378 0.71 0.297759
Target:  5'- cGCCGcGGCGUccagcgcgaaggccaGCGCCU--CGCCCGCGa -3'
miRNA:   3'- aCGGC-UCGUA---------------CGCGGAgcGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 130311 0.73 0.206027
Target:  5'- cGCgGAGCGcgcGCGCCgcgcgcucggggagcUCGCGCgCCGCGg -3'
miRNA:   3'- aCGgCUCGUa--CGCGG---------------AGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 129792 0.72 0.229577
Target:  5'- cGCCG-GCGUGgGCC-CGCaugagGCCCGUGa -3'
miRNA:   3'- aCGGCuCGUACgCGGaGCG-----CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 129709 0.7 0.32942
Target:  5'- cGCCGAGCAgGCaGUugagcagcaggUUCGCggGCCCGCGa -3'
miRNA:   3'- aCGGCUCGUaCG-CG-----------GAGCG--CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 129122 0.69 0.398309
Target:  5'- gGCCGAgGCGcgcuggGCGCCaaagaGCGCCgGCGc -3'
miRNA:   3'- aCGGCU-CGUa-----CGCGGag---CGCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 129005 0.66 0.569661
Target:  5'- cGCCGugaugcccuucAGCGcgGCGUCggcCGCGCgCGCGu -3'
miRNA:   3'- aCGGC-----------UCGUa-CGCGGa--GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 128577 0.67 0.466778
Target:  5'- cGCCucGGGCGacauCGUCUCGCgcgGCCCGCGc -3'
miRNA:   3'- aCGG--CUCGUac--GCGGAGCG---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 128189 0.68 0.423236
Target:  5'- aGgCGAGCGUGcCGCgCUCcaugGCGCCCcagGCGu -3'
miRNA:   3'- aCgGCUCGUAC-GCG-GAG----CGCGGG---CGC- -5'
29649 5' -63.6 NC_006151.1 + 128012 0.73 0.224271
Target:  5'- cGCgGGGCGgcggcgacgGCGUCUgCGaCGCCCGCGg -3'
miRNA:   3'- aCGgCUCGUa--------CGCGGA-GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 127847 0.68 0.431751
Target:  5'- cGUCGcGGC-UGCGCCggagggggCGcCGCCCGCc -3'
miRNA:   3'- aCGGC-UCGuACGCGGa-------GC-GCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 127566 0.67 0.484834
Target:  5'- gGCCGccGCcgGCGCCUCGUucgccgucCCCGuCGg -3'
miRNA:   3'- aCGGCu-CGuaCGCGGAGCGc-------GGGC-GC- -5'
29649 5' -63.6 NC_006151.1 + 127402 0.67 0.491233
Target:  5'- gGCCGAgucgacgggagcccGCGggGuCGCCUCgGCGCUCGUGc -3'
miRNA:   3'- aCGGCU--------------CGUa-C-GCGGAG-CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 125171 0.72 0.234989
Target:  5'- cGCgCGAGCucgaGCGCCUCGgccuCGCCgGCGu -3'
miRNA:   3'- aCG-GCUCGua--CGCGGAGC----GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 124459 0.66 0.531337
Target:  5'- cGUCGAGguggaccUGCGCCccUCGCGCCugaaCGCGc -3'
miRNA:   3'- aCGGCUCgu-----ACGCGG--AGCGCGG----GCGC- -5'
29649 5' -63.6 NC_006151.1 + 123847 0.7 0.343941
Target:  5'- aGCUGcGCGggGCGCCgUCGCGCuaGCGc -3'
miRNA:   3'- aCGGCuCGUa-CGCGG-AGCGCGggCGC- -5'
29649 5' -63.6 NC_006151.1 + 123228 0.67 0.503217
Target:  5'- cGCCGGGUuccGCGCacggCGCGCguuCUGCGa -3'
miRNA:   3'- aCGGCUCGua-CGCGga--GCGCG---GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 123072 0.72 0.246133
Target:  5'- cGCCGAGCGccggcgGCGCCUguaCGCGgaCCGCc -3'
miRNA:   3'- aCGGCUCGUa-----CGCGGA---GCGCg-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 122724 0.72 0.240507
Target:  5'- gGcCCGAGCAcuuugaccGCGCCcgCGCGgCCGCGa -3'
miRNA:   3'- aC-GGCUCGUa-------CGCGGa-GCGCgGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.