miRNA display CGI


Results 61 - 80 of 389 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 122664 0.69 0.390211
Target:  5'- gGCgCGAGCGccGCGCCgaggUGCGCgCgGCGg -3'
miRNA:   3'- aCG-GCUCGUa-CGCGGa---GCGCG-GgCGC- -5'
29649 5' -63.6 NC_006151.1 + 122390 0.67 0.484834
Target:  5'- cGCCGcgGGCGcGCGCUggcgGCGCUCGCc -3'
miRNA:   3'- aCGGC--UCGUaCGCGGag--CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 121875 0.76 0.135027
Target:  5'- cGCCGcucacguGCGcgcUGCGCCUgGCGCUCGCGu -3'
miRNA:   3'- aCGGCu------CGU---ACGCGGAgCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 121430 0.71 0.269732
Target:  5'- cGCgGGGCucgcGCcgGCCUCGCugguGCCCGCGg -3'
miRNA:   3'- aCGgCUCGua--CG--CGGAGCG----CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 121334 0.67 0.474861
Target:  5'- cGCCGAGCugGUGCGCgacCUCGaggGCCagacgggCGCGg -3'
miRNA:   3'- aCGGCUCG--UACGCG---GAGCg--CGG-------GCGC- -5'
29649 5' -63.6 NC_006151.1 + 120882 0.73 0.199286
Target:  5'- cGCUccGuCAUG-GCCUCGCGCCCGCu -3'
miRNA:   3'- aCGGcuC-GUACgCGGAGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 120809 0.69 0.358916
Target:  5'- cGCCGcGCGcgagGUGCUggaCGCGCCgCGCGa -3'
miRNA:   3'- aCGGCuCGUa---CGCGGa--GCGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 120354 0.77 0.116275
Target:  5'- gGCCGGGCucgcggGCGCCUaccaGCGCCCGg- -3'
miRNA:   3'- aCGGCUCGua----CGCGGAg---CGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 120316 0.76 0.131719
Target:  5'- gGCuCGGGCAgccucucgGaCGCCgcgCGCGCCCGCGu -3'
miRNA:   3'- aCG-GCUCGUa-------C-GCGGa--GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 119808 0.69 0.374342
Target:  5'- cGCCGgcuuccGGCAcGCGCUgCGCGCuCUGCGc -3'
miRNA:   3'- aCGGC------UCGUaCGCGGaGCGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 119500 0.72 0.246133
Target:  5'- cGCCGAgguccccugcucGCucugcgaccGCGCCUCGCGCcCCGCc -3'
miRNA:   3'- aCGGCU------------CGua-------CGCGGAGCGCG-GGCGc -5'
29649 5' -63.6 NC_006151.1 + 119293 0.71 0.301752
Target:  5'- gGaCGGGCgcGUGCugcugcacacgGCCUCGCaGCCCGCGa -3'
miRNA:   3'- aCgGCUCG--UACG-----------CGGAGCG-CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 118942 0.66 0.551356
Target:  5'- cGCCGAcGCGgcgcugucgcuggagGCGCUcgUCGcCGCCgGCGu -3'
miRNA:   3'- aCGGCU-CGUa--------------CGCGG--AGC-GCGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 118743 0.68 0.449076
Target:  5'- gUGCUGGGCccgGCGgC-CGUGCCaCGCGc -3'
miRNA:   3'- -ACGGCUCGua-CGCgGaGCGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 118328 0.76 0.132047
Target:  5'- -cCCGAGCA-GCGCCgcgcccgcccucucgCGCGCCUGCGa -3'
miRNA:   3'- acGGCUCGUaCGCGGa--------------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117785 0.66 0.550397
Target:  5'- -uCCGGGCGggGCGCCaCGC-CCgGCGg -3'
miRNA:   3'- acGGCUCGUa-CGCGGaGCGcGGgCGC- -5'
29649 5' -63.6 NC_006151.1 + 117627 0.68 0.423236
Target:  5'- cGCgCGAGCGUGC-CCaCGUGCacgCCGCGc -3'
miRNA:   3'- aCG-GCUCGUACGcGGaGCGCG---GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117268 0.66 0.521897
Target:  5'- gGCCGcGCGcgGcCGCCgccgacagCGCGCgCGCGa -3'
miRNA:   3'- aCGGCuCGUa-C-GCGGa-------GCGCGgGCGC- -5'
29649 5' -63.6 NC_006151.1 + 117139 0.66 0.512522
Target:  5'- cGCgGAG-GUGCGCgaCcagGCGCCCGCu -3'
miRNA:   3'- aCGgCUCgUACGCGgaG---CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 117070 0.67 0.475764
Target:  5'- gGUCGAGCAgcagGCGCguggUCGCGUCCaCGc -3'
miRNA:   3'- aCGGCUCGUa---CGCGg---AGCGCGGGcGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.