miRNA display CGI


Results 81 - 100 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29649 5' -63.6 NC_006151.1 + 116292 0.69 0.366573
Target:  5'- cGCCGAGUccugcacgcaGUaGCGCCcgaugacgcCGCGCUCGCGc -3'
miRNA:   3'- aCGGCUCG----------UA-CGCGGa--------GCGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 116125 0.69 0.374342
Target:  5'- uUGUCGGGCAgcacgaaGCCgCGCgaGCCCGCGa -3'
miRNA:   3'- -ACGGCUCGUacg----CGGaGCG--CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 115577 0.66 0.550397
Target:  5'- cGCgCGGGCAgGuCGCgCUCGagcaGCUCGCGc -3'
miRNA:   3'- aCG-GCUCGUaC-GCG-GAGCg---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 115173 0.68 0.431751
Target:  5'- aGCCGcgcGGCAggggGCGCUccagccaGCGCgCCGCGg -3'
miRNA:   3'- aCGGC---UCGUa---CGCGGag-----CGCG-GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 115122 0.75 0.160399
Target:  5'- cGCCGGcgacgcgcGCGUGCGCCUcggccagcaCGCGCCCGa- -3'
miRNA:   3'- aCGGCU--------CGUACGCGGA---------GCGCGGGCgc -5'
29649 5' -63.6 NC_006151.1 + 114141 0.68 0.413987
Target:  5'- cGCCGAGCc-GCGgCUCGgGCgcagcgaCCGCGc -3'
miRNA:   3'- aCGGCUCGuaCGCgGAGCgCG-------GGCGC- -5'
29649 5' -63.6 NC_006151.1 + 113898 0.66 0.513456
Target:  5'- gGCCGcGCG-GCGCaagacgcugacgcgCGCgGCCCGCGa -3'
miRNA:   3'- aCGGCuCGUaCGCGga------------GCG-CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 113604 0.68 0.423236
Target:  5'- cGCCGuGGCcgaGCGCCagGCGgaCCCGCGc -3'
miRNA:   3'- aCGGC-UCGua-CGCGGagCGC--GGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 113543 0.71 0.288604
Target:  5'- cGCUGAuGC--GCGCCgCGgGCCCGCGc -3'
miRNA:   3'- aCGGCU-CGuaCGCGGaGCgCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 113214 0.69 0.390211
Target:  5'- cGCCGAGgA-GCGCCggcacCGCG-CCGUGg -3'
miRNA:   3'- aCGGCUCgUaCGCGGa----GCGCgGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 113023 0.67 0.475764
Target:  5'- gGCgaCGAcGCGUGCGCCggGUGCUgCGCGg -3'
miRNA:   3'- aCG--GCU-CGUACGCGGagCGCGG-GCGC- -5'
29649 5' -63.6 NC_006151.1 + 112193 0.68 0.409825
Target:  5'- cGCCGcgcccGCA-GCGCCuccccgugggcgcagUCGCGCUCGCu -3'
miRNA:   3'- aCGGCu----CGUaCGCGG---------------AGCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 111046 0.66 0.560006
Target:  5'- --aCGGGCAggGCGCCcucgaGCGUCUGCGc -3'
miRNA:   3'- acgGCUCGUa-CGCGGag---CGCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 110181 0.66 0.559043
Target:  5'- cGCC--GCGUGcCGCCUgauagcgCGcCGCCUGCGg -3'
miRNA:   3'- aCGGcuCGUAC-GCGGA-------GC-GCGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 109799 0.68 0.406513
Target:  5'- cGCCgGAGUuUGCGCCgccgGC-CCCGCGc -3'
miRNA:   3'- aCGG-CUCGuACGCGGag--CGcGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 109751 0.66 0.512522
Target:  5'- aUGCCGuGGCcgcCGCCguuggagGCGCCCGCa -3'
miRNA:   3'- -ACGGC-UCGuacGCGGag-----CGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 109112 0.68 0.449076
Target:  5'- aGgCGAGC---CGCCggccCGCGCCCGCc -3'
miRNA:   3'- aCgGCUCGuacGCGGa---GCGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 107604 0.68 0.440365
Target:  5'- gGCCccGCcgGCGCCgC-CGCCCGCc -3'
miRNA:   3'- aCGGcuCGuaCGCGGaGcGCGGGCGc -5'
29649 5' -63.6 NC_006151.1 + 107547 0.69 0.351372
Target:  5'- gGCCccGCcgGCGCCgccgccCGCcaaGCCCGCGg -3'
miRNA:   3'- aCGGcuCGuaCGCGGa-----GCG---CGGGCGC- -5'
29649 5' -63.6 NC_006151.1 + 107052 0.71 0.269732
Target:  5'- cGgCGAGCcgGCcuGCCUCGUGCUgGUGg -3'
miRNA:   3'- aCgGCUCGuaCG--CGGAGCGCGGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.